DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cad and Hoxd8

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus


Alignment Length:382 Identity:102/382 - (26%)
Similarity:139/382 - (36%) Gaps:148/382 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVSHYYNTL--PYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVDSSHAAHHAAAAHQ 63
            |.|::.|.|  .|....:||..|.|:|||:..|  |.|:    :..|..:|...|     |||.|
Mouse     1 MSSYFVNPLYSKYKAAAAAAAAAAAAAAGEAIN--PTYY----DCHFAPEVSGRH-----AAALQ 54

  Fly    64 MYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSS 128
            :|.||          :||..|:                       |.|.|.|             
Mouse    55 LYGNS----------AAGFPHA-----------------------HPHPHPH------------- 73

  Fly   129 GGAPGAPQLNETNSSIGVGGAGGGGGVGGATD------GGPGSA-----PPNHQQHIAEGLPSPP 182
               |..|.           |.|||||.|...|      |.|.:|     ||.|..      |.||
Mouse    74 ---PSPPP-----------GCGGGGGPGPGQDYFHAGAGSPTAAYQAAPPPPHPP------PPPP 118

  Fly   183 ITVSGSEISSPGAPTS-------------ASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNN 234
            ....|. |:..|.|..             .:.....|..:....:::.|...:.::.        
Mouse   119 PPPCGG-IACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHL-------- 174

  Fly   235 NNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYT 299
                   |..:|||:  .|.||:..|.|                       |:.|.    |..|:
Mouse   175 -------NQSSSPSQ--MFPWMRPQAAP-----------------------GRRRG----RQTYS 203

  Fly   300 DFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDP 356
            .||.||||||:..:.|:|.:|:.|::.||:|:||||||||||||.|.:|:|.|...|
Mouse   204 RFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKENNKDKFP 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 30/54 (56%)
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125 26/119 (22%)
COG5576 139..272 CDD:227863 47/166 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 5/38 (13%)
Antp-type hexapeptide 183..188 2/4 (50%)
Homeodomain 196..252 CDD:459649 31/59 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 4/9 (44%)

Return to query results.
Submit another query.