DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and Hoxd3

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:464 Identity:110/464 - (23%)
Similarity:163/464 - (35%) Gaps:159/464 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YYNSHHMFHSAAAASAGEWHS--------PASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSA 121
            ||.:..:|.....:.|.:.:.        |..:.|::...:.|:||..:            .|||
Mouse    22 YYENPGLFGGYGYSKATDTYGYSTPHQPYPPPAAANSLDSDYPSSACSI------------QSSA 74

  Fly   122 SSGSSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPP--NHQQHIAEGLPSPPIT 184
            ...:.:..||    :||.:....|.|.:.||||         |:.||  |.:|...:..|.||.|
Mouse    75 PLRAPAHKGA----ELNGSCMRPGTGNSQGGGG---------GNQPPGLNSEQQPPQPPPPPPPT 126

  Fly   185 VSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSK 249
            :..|..::||:...|                                 ......:|.::.:|...
Mouse   127 LPPSSPTNPGSGVPA---------------------------------KKTKGGLSASSSSSTIS 158

  Fly   250 PPYFDWMKKPAYPA-QPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTS 313
            ...|.|||:....: |.....:|..|.||.|....||.:.||      .||..|.:|||||:..:
Mouse   159 KQIFPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRT------AYTSAQLVELEKEFHFN 217

  Fly   314 RYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNK--------KGSDPN---VMGVGVQHAD 367
            ||:...|:.|:|..|:|:|||:||||||||.|.:|..|        .|..|.   .:|....|..
Mouse   218 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVA 282

  Fly   368 YSQLL-------------DAKAKLEPGLH--------LS----------------HSLAHSMNPM 395
            ||..|             .|.||.:|.::        ||                |.:|.:....
Mouse   283 YSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYPAPEFEPHPMASNGGGF 347

  Fly   396 AAMNI--------------------PAMRL----HPHLAAHSHSLAAVAAHSH------------ 424
            |:.|:                    |...|    ||..|:..:|.||....:|            
Mouse   348 ASANLQGSPVYVGGNFVDSMAPTSGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYT 412

  Fly   425 QLQQQHSAQ 433
            .|...||:|
Mouse   413 DLSAHHSSQ 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 27/54 (50%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 45/211 (21%)
Antp-type hexapeptide 161..166 2/4 (50%)
Homeodomain 196..252 CDD:459649 29/61 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 3/21 (14%)
DUF4074 370..431 CDD:463833 13/52 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433 4/21 (19%)

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