DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and Hoxb3

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_034588.2 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus


Alignment Length:403 Identity:98/403 - (24%)
Similarity:138/403 - (34%) Gaps:130/403 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 YYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSSSG 129
            ||:     ::|||...|....|.|   :.|..:.|.   |...|...|.......||.|..|...
Mouse     6 YYD-----NTAAALFGGYSSYPGS---NGFGYDGPP---QPPFQAATHLEGDYQRSACSLQSLGN 59

  Fly   130 GAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPG 194
            .||.| :..|.|.|.                ..||.||        |.||:|           ||
Mouse    60 AAPHA-KSKELNGSC----------------MRPGLAP--------EPLPAP-----------PG 88

  Fly   195 APTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKP 259
            :|..:::|       .|..:|:||....:.:.|......:|:.....          .|.|||:.
Mouse    89 SPPPSAAP-------TSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQ----------IFPWMKES 136

  Fly   260 AYPAQPQPDLSSSPNLE-------------------------------DLSDLLDASGKTRTKDK 293
            ...::.:   :|||...                               |.|....|:.|     :
Mouse   137 RQTSKLK---NSSPGTAEGCGGGGGGGGGGGGGGGGSSGGGGGGGGGGDKSPPGSAASK-----R 193

  Fly   294 YRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNK------- 351
            .|..||..|.:|||||:..:||:...|:.|:|..|:|||||:||||||||.|.:|..|       
Mouse   194 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASS 258

  Fly   352 ------KGSDPNVM--GVGVQHADYSQLLDAKAKLEPGLHLSHSLAHSM------------NPMA 396
                  .||.|..|  ..|..:|.:|......:...|.....|..|:::            .|..
Mouse   259 SGGPSPAGSPPQPMQSTAGFMNALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQPPLKGCGAPQK 323

  Fly   397 AMNIPAMRLHPHL 409
            ....||....||:
Mouse   324 YPPTPASEYEPHV 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 29/54 (54%)
Hoxb3NP_034588.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 22/103 (21%)
Antp-type hexapeptide 129..134 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 7/66 (11%)
Homeodomain 192..248 CDD:459649 30/60 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 5/26 (19%)
DUF4074 369..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433
Blue background indicates that the domain is not in the aligned region.

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