DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and Gsx1

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:237 Identity:67/237 - (28%)
Similarity:98/237 - (41%) Gaps:55/237 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 PGSAPPNHQQHIAEGLPSP--------------PITVSGSEISSPGAPTS-----ASSPHHHLAH 208
            |.:.||.|..|   || ||              |:.|:.|::..|..|.:     ||.|..    
Mouse    30 PYAVPPPHALH---GL-SPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPF---- 86

  Fly   209 HLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSP 273
                            .|...|......:|||......|:.......:.:.:||. |.|......
Mouse    87 ----------------GSQYCHAPLGRQHSVSPGVAHGPAAAAAAAALYQTSYPL-PDPRQFHCI 134

  Fly   274 NLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIW 338
            :::..|:.|.:|.:.||      .:|..|.||||:|:.::.|::..|:.|:|..|:|||:|||||
Mouse   135 SVDSSSNQLPSSKRMRT------AFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIW 193

  Fly   339 FQNRRAKERKQNKKGSDPNVMGVGV-----QHADYSQLLDAK 375
            |||||.|.:|:.|..:.....|.|.     |....|.|..||
Mouse   194 FQNRRVKHKKEGKGSNHRGGAGAGAGGGAPQGCKCSSLSSAK 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 26/54 (48%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 147..203 CDD:459649 28/61 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 9/35 (26%)
Blue background indicates that the domain is not in the aligned region.

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