Protein Alignment cad and hoxa9

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: XP_031760007.1
• Gene: hoxa9 / 116411596
• XenbaseID: XB-GENE-481973
• Length: 261
• Species: Xenopus tropicalis
• Alignment Length: 300
• Identity: 75/300 - (25%)
• Similarity: 102/300 - (34%)
• Gaps: 111/300 - (37%)

  Fly    72 FHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSG----------SS 126
            |.|..:..:..|:.....||:| |.:|          :|.:..|....|||.|          ::
 Frog    53 FQSKTSVFSSPWNPLHPQTANN-VSSV----------YHPYMHHQPPISASDGRYMRSWLDPMAA 106

  Fly   127 SSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEIS 191
            .|...||.|    ::.|.|:               .|....|....  .....|.|:.||.....
 Frog   107 GSLPFPGFP----SSRSYGI---------------KPEPVAPRRGD--CSTFDSRPLPVSDYPCG 150

  Fly   192 SP-------GAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSK 249
            ||       |.|..|.:               |..|.:|...|....||
 Frog   151 SPTDRDKQIGDPPFAVT---------------NGENPSNGEKPPIDPNN---------------- 184

  Fly   250 PPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSR 314
             |..:|:                              ..|:..|.|..||..|.||||||:..:.
 Frog   185 -PAANWL------------------------------HARSTRKKRCPYTKHQTLELEKEFLFNM 218

  Fly   315 YITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGS 354
            |:|..|:.|:|:.|:|:||||||||||||.|.:|.||..|
 Frog   219 YLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRS 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	31/54 (57%)
hoxa9	XP_031760007.1	Hox9_act	1..182	CDD:461369	35/175 (20%)
		Homeodomain	196..252	CDD:459649	31/55 (56%)