Protein Alignment cad and Msx3

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_446164.1
• Gene: Msx3 / 114504
• RGDID: 620932
• Length: 204
• Species: Rattus norvegicus
• Alignment Length: 163
• Identity: 51/163 - (31%)
• Similarity: 75/163 - (46%)
• Gaps: 29/163 - (17%)

  Fly   240 SNNNRTSPSKPPYFDWMKKP-AYP---AQPQPDLSSSPNLEDLSDLLDASGKTRTKDKYRVVYTD 300
            |.:......:||   ...|| |:|   |...|..:.||....|.       |.:|..|.|..:|.
  Rat    42 SESGELGEERPP---GASKPGAWPPPVAHSCPPRAPSPPPCTLR-------KHKTNRKPRTPFTT 96

  Fly   301 FQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQH 365
            .|.|.||:::...:|::|..::|.:.:|||:|.||||||||||||.::              :|.
  Rat    97 AQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR--------------LQE 147

  Fly   366 ADYSQL-LDAKAKLEPGLHLSHSLAHSMNPMAA 397
            |:..:| |.||..|.....|...|...::..||
  Rat   148 AELEKLKLTAKPLLPAAFALPFPLGTQLHSSAA 180

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	26/54 (48%)
Msx3	NP_446164.1	Homeodomain	88..144	CDD:459649	26/55 (47%)