DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and hoxd9

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:XP_012826755.2 Gene:hoxd9 / 100497640 XenbaseID:XB-GENE-485791 Length:278 Species:Xenopus tropicalis


Alignment Length:385 Identity:100/385 - (25%)
Similarity:135/385 - (35%) Gaps:148/385 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VSHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVDSSHAAHHAAAAHQMYY 66
            :|:||.......:......|..|.|||  |.||.     |:    ||.|:|.             
 Frog     7 ISNYYVDSLIGHEGEEGYGARFSQAGQ--NTTPR-----PS----GDGDTSD------------- 47

  Fly    67 NSHHMFHSAAAAS-AGEWHSPASSTADNFVQNVPTSAHQLMQQHHHHHAHASSSSASSGSSS--- 127
                 |||.:.|| :|.:  |.|.|.   ||..|.:.   |...:|.:...|..:|.||..:   
 Frog    48 -----FHSCSFASKSGVF--PTSWTT---VQPQPAAG---MTGIYHPYVGQSHLAADSGRYTVRS 99

  Fly   128 -----SGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSG 187
                 |..||         |..|....|...|:                        .|......
 Frog   100 WLDPISSAAP---------SFSGFPANGRNYGI------------------------KPESAAKR 131

  Fly   188 SEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPY 252
            :|.||.| |.:.:.|.:                                  ..|:...|..||| 
 Frog   132 TECSSFG-PQALTLPEY----------------------------------TCNSFPESTEKPP- 160

  Fly   253 FDWMKKPAYPAQPQPDLSSSPNLEDLSD----------------LLDASG------KTRTKDKYR 295
               .|:||.|       |..||..:|.:                .||.:.      ..|:..|.|
 Frog   161 ---AKEPAAP-------SEEPNSTELKEEKEQQQQQQQQQQQQQQLDPNNPAANWIHARSTRKKR 215

  Fly   296 VVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNRRAKERKQNK-KGS 354
            ..||.:|.||||||:..:.|:|..|:.|:|:.|:|:||||||||||||.|.:|.|| ||:
 Frog   216 CPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMNKEKGN 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 31/54 (57%)
hoxd9XP_012826755.2 Hox9_act 1..181 CDD:461369 61/289 (21%)
Homeodomain 212..260 CDD:459649 25/47 (53%)

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