Protein Alignment cad and hoxc10

DIOPT Version :10

• Sequence 1: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Sequence 2: NP_001258236.1
• Gene: hoxc10 / 100487723
• XenbaseID: XB-GENE-486915
• Length: 351
• Species: Xenopus tropicalis
• Alignment Length: 140
• Identity: 47/140 - (33%)
• Similarity: 72/140 - (51%)
• Gaps: 20/140 - (14%)

  Fly   231 NNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQP----DLSSSPNLEDLSDLLDASGK---- 287
            |...:|.|::.|..||.:...  |...:.:.||...|    |...|.|.:..:|..||..|
 Frog   201 NTKTDNQSLATNLTTSSATAS--DIKTEKSLPAPKLPPSEGDKEPSKNTDTSTDNSDAEAKEDIK 263

  Fly   288 ----------TRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQNR 342
                      .::..|.|..||..|.||||||:..:.|:|..|:.|::::::|::||||||||||
 Frog   264 AENAAGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNR 328

  Fly   343 RAKERKQNKK 352
            |.|.:|.|::
 Frog   329 RMKLKKMNRE 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	28/54 (52%)
hoxc10	NP_001258236.1	Homeodomain	278..334	CDD:459649	28/55 (51%)