DRSC/TRiP Functional Genomics Resources

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Protein Alignment cad and meox2

DIOPT Version :10

Sequence 1:NP_001260641.1 Gene:cad / 35341 FlyBaseID:FBgn0000251 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_001116898.1 Gene:meox2 / 100144655 XenbaseID:XB-GENE-852818 Length:300 Species:Xenopus tropicalis


Alignment Length:413 Identity:88/413 - (21%)
Similarity:140/413 - (33%) Gaps:147/413 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HQFLGDVDSSHAAHH-----AAAAHQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPT-- 100
            |...|.:.|.||...     |.::..::..|.||          .:...:||::...:...|.  
 Frog     3 HTLFGCLRSPHATSQGLHPFAQSSLALHGRSDHM----------SYPDLSSSSSSCILTGYPNEE 57

  Fly   101 ----SAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDG 161
                |.|.....|||||.|                                              
 Frog    58 GMFGSQHHRGHHHHHHHHH---------------------------------------------- 76

  Fly   162 GPGSAPPNHQQ----------HIAEGLPSPPITVSGSEI--SSPGAPTSASSPHHHLAHHLSAVA 214
                   :|||          ||.: :.|||.:...|..  ...|.|..:.||        |.:.
 Frog    77 -------HHQQQQHQTLQSNWHIPQ-MSSPPASTRHSLCLQQESGPPDLSGSP--------SILC 125

  Fly   215 NNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDL----SSSPNL 275
            :|.::...|:::.:.        .|:.            |:.::...||:.:...    |.|.:.
 Frog   126 SNTSSLGTNSSTGAA--------CVTG------------DYGRQTLSPAEAEKRTGKRKSDSSDS 170

  Fly   276 EDLSDLLDASGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKIWFQ 340
            ::.|...|.:.|.|   |.|..:|..|..|||.|:....|:|..|:.|:|..|.|:|||||:|||
 Frog   171 QEGSYKSDVNSKPR---KERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQ 232

  Fly   341 NRRAKERKQNKKGSDPNVMGVGVQHADYSQLLDAKAKLEP----GLHLSHSLAHSMNPMAAMNIP 401
            |||.|.::  .||..   .|...:..:...:  .|..|.|    |:. |.||.|:.:.:...:  
 Frog   233 NRRMKWKR--VKGGQ---QGAAAREKELGNV--KKGTLLPSELSGIR-SSSLQHTADSLTNDD-- 287

  Fly   402 AMRLHPHLAAHSHSLAAVAAHSH 424
                       ||.....:.|:|
 Frog   288 -----------SHDSDQSSEHAH 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cadNP_001260641.1 Homeodomain 293..348 CDD:459649 27/54 (50%)
meox2NP_001116898.1 Homeodomain 184..240 CDD:459649 28/58 (48%)

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