DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns4 and AT2G27200

DIOPT Version :9

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_180288.1 Gene:AT2G27200 / 817262 AraportID:AT2G27200 Length:537 Species:Arabidopsis thaliana


Alignment Length:608 Identity:158/608 - (25%)
Similarity:251/608 - (41%) Gaps:157/608 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KKKDQMLQKRNTKGP------PKYLRSTQESYEDSDVPETTRKLMEQPFA-------------RG 59
            |..:.|:|:...||.      .|.|.|..| ..|.|......:..|:.||             ..
plant    15 KHHNHMIQETKEKGKSYKDQHKKVLESVTE-VSDIDAIIEQAEEAERLFAIHHDSATPVPINMDT 78

  Fly    60 GNRNKNVNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQREVDDRYFAGCDFPVRPPWTLTESK 124
            |:.:..:.         .|:..||..:|     |.|..:..:|          |.||.||...:.
plant    79 GSSSSGIT---------AKEWKEQRMRE-----EALHASSLQV----------PRRPHWTPKMNV 119

  Fly   125 EELDRTENRYFKEYVDELQKKQRAGDSKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLM 189
            |:||..|.:.|..:..:|...:. .:...|:.||.||:.|||||||||.||:::::||.|.....
plant   120 EKLDANEKQAFLTWRRKLASLEE-NEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPLFY 183

  Fly   190 FPPSLYDYI--INTLKKHAIVVFNKVDLVEPHAVVAWRQYF-RDRYPQLPVVLF---------AS 242
            ..|.|..|.  |:..||..::| ||.||:..:....|.:|| |:.      :||         |:
plant   184 RCPDLEAYAQEIDEHKKTMLLV-NKADLLPSYVREKWAEYFSRNN------ILFVFWSAKAATAT 241

  Fly   243 FLPRSRKGSQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDILDEISTA 307
            ...:..|...|.|...:::......:|        |..||.       :.::.:.|:|:      
plant   242 LEGKPLKEQWRAPDTTQKTDNPAVKVY--------GRDDLL-------DRLKLEALEIV------ 285

  Fly   308 VEGELKISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLINALKGRKVVSVSRTPGHTKHFQT 372
               :::.|..:..|..|.   |...:.:|.:|:|||||||.||||.|:|...|:.|||.||||||
plant   286 ---KMRKSRGVSATSTES---HCEQVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT 344

  Fly   373 IFLTPLVRLCDCPGLVFPS-STPKSLQVLLGSFPISQLAVPYRSLKFLGE-----------HLNL 425
            :.::..:.||||||||||| |:.:...|..|..||.::.....::|.:.|           :::|
plant   345 LIISEDLMLCDCPGLVFPSFSSSRYEMVASGVLPIDRMTEHLEAIKVVAELVPRHAIEDVYNISL 409

  Fly   426 PQLLRLHLPEDYDEWS----AVAISDAWAYKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVLQ 486
            |:      |:.|:..|    |..:...:...||:: |.:..||..|||..||:..:.|       
plant   410 PK------PKSYEPQSRPPLASELLRTYCLSRGYV-ASSGLPDETRAARQILKDYIEG------- 460

  Fly   487 FYPPGFEERREHWLQHPDVGEVKKYQQVELDEPESETNGDTSSVCSDTADSEDEDEDSSNDETNA 551
                    :..|:...|::                 |..|.:....||..:|..:        .:
plant   461 --------KLPHFAMPPEI-----------------TRDDENETADDTLGAETRE--------GS 492

  Fly   552 DEEECGIREDAPRSRNVFALLED 574
            ..|:.|  |:|| |..:..:|:|
plant   493 QTEKKG--EEAP-SLGLDQVLDD 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 78/238 (33%)
GTPase_YlqF 165..474 CDD:274669 102/336 (30%)
AT2G27200NP_180288.1 RbgA 142..482 CDD:224083 114/413 (28%)
HSR1_MMR1 157..362 CDD:206750 78/238 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55394
OrthoDB 1 1.010 - - D839833at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

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