DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns4 and LSG1

DIOPT Version :9

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_060855.2 Gene:LSG1 / 55341 HGNCID:25652 Length:658 Species:Homo sapiens


Alignment Length:657 Identity:176/657 - (26%)
Similarity:266/657 - (40%) Gaps:179/657 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 QKRNTKGPPKYLRSTQESYEDSDVPETTRKLMEQPFARGGNRNKNVNRYNLQFYQEGKKELEQMK 85
            :|.|.|..|...|:...|:|:|                  .|.|.::..|.||.           
Human    76 EKLNIKFVPAEARTGLLSFEES------------------QRIKKLHEENKQFL----------- 111

  Fly    86 QEGFKPFEKLSPAQREVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGD 150
                                    | .|.||.|....:.|||.:.|...|.|:..:|   .|..:
Human   112 ------------------------C-IPRRPNWNQNTTPEELKQAEKDNFLEWRRQL---VRLEE 148

  Fly   151 SKELSL--FELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYIIN-TLKKHAIVVFNK 212
            .::|.|  ||.||:.|||||||:|.|||::.|||.|...|.....|..|:.. ...|..:::.||
Human   149 EQKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEMDANKENVILINK 213

  Fly   213 VDLVEPHAVVAWRQYFRDRYPQLPVVLF---ASFLPRSRKGSQRGPQAHRRSMEGVYNIYKECQR 274
            .||:......||..||...  .:.|:.:   |..:|.:....:...:..|:|....:.    ...
Human   214 ADLLTAEQRSAWAMYFEKE--DVKVIFWSALAGAIPLNGDSEEEANRDDRQSNTTKFG----HSS 272

  Fly   275 YVQGEVDLTTWEQ-------KIREDMRSDQLDI---------LDEISTAVE----------GELK 313
            :.|.|:..:..|.       .:.|:..:|:.|.         .|:..|..|          .:.|
Human   273 FDQAEISHSESEHLPARDSPSLSENPTTDEDDSEYEDCPEEEEDDWQTCSEEDGPKEEDCSQDWK 337

  Fly   314 ISSSIDT------TP------------------------HEHVKYHSGVLTIGCIGFPNVGKSSL 348
            .||:.|:      ||                        |...|...|.||:|.:|:|||||||.
Human   338 ESSTADSEARSRKTPQKRQIHNFSHLVSKQELLELFKELHTGRKVKDGQLTVGLVGYPNVGKSST 402

  Fly   349 INALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPS--STPKSLQVLLGSFPISQLA- 410
            ||.:.|.|.||||.||||||||||:::.|.:.||||||||.||  || |:.....|..||.|:. 
Human   403 INTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSFVST-KAEMTCSGILPIDQMRD 466

  Fly   411 -VPYRSL--KFLGEH-LNLPQLLRLHLP-EDYDEW---SAVAISDAWAYKRGFLTAKAARPDRYR 467
             ||..||  :.:..| |.....:.:..| ||.|..   ::..:..|:.|.|||:||. .:||:.|
Human   467 HVPPVSLVCQNIPRHVLEATYGINIITPREDEDPHRPPTSEELLTAYGYMRGFMTAH-GQPDQPR 530

  Fly   468 AANHILRMCLAGQQMLVLQFYPPG-----FEERREHWLQHP--------DVGEVKKYQQVE---- 515
            :|.:||:..::|:  |:....|||     |:.:.:..|::.        .:|..||.:|:|    
Human   531 SARYILKDYVSGK--LLYCHPPPGRDPVTFQHQHQRLLENKMNSDEIKMQLGRNKKAKQIENIVD 593

  Fly   516 -----LDEPESETNG---------DTSSVCSDTADSEDEDEDSSNDETNADEEECGIREDAPRSR 566
                 .:...:.|.|         .:..|.:.||.||:..........|.:::|        :||
Human   594 KTFFHQENVRALTKGVQAVMGYKPGSGVVTASTASSENGAGKPWKKHGNRNKKE--------KSR 650

  Fly   567 NVFALLE 573
            .::..|:
Human   651 RLYKHLD 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 88/286 (31%)
GTPase_YlqF 165..474 CDD:274669 118/379 (31%)
LSG1NP_060855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
RbgA 151..554 CDD:224083 131/412 (32%)
HSR1_MMR1 163..444 CDD:206750 88/286 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 250..355 17/108 (16%)
P-loop_NTPase 366..>404 CDD:304359 14/37 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 623..658 9/43 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55394
OrthoDB 1 1.010 - - D206558at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.830

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