DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns4 and Ns2

DIOPT Version :9

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster


Alignment Length:648 Identity:144/648 - (22%)
Similarity:223/648 - (34%) Gaps:264/648 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GKKKKD--QMLQKRN------TKGPPKYLR---STQESYEDSDVPETTRKLMEQPFARGGNRNKN 65
            ||..||  |::.|.:      .....||.|   ...||::.:..|:..||               
  Fly   107 GKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFGPKKQRK--------------- 156

  Fly    66 VNRYNLQFYQEGKKELEQMKQEGFKPFEKLSPAQREVDDRYFAGCDFPVRPPWTLTESKEEL--- 127
              |.:|:                .:..|.||.|..:..|:|               :|.::|   
  Fly   157 --RVSLK----------------VRDLEDLSKAADDQADKY---------------DSAKDLDLI 188

  Fly   128 --DRTENRYFKEYVDELQKKQRAGDSKELSLFELNLETWRQLWRVLEFSDILLIIVDVRYATLMF 190
              |..|.:..:::|      ..||.||.:         |.:|.:|::.||:||.::|.|      
  Fly   189 REDTGEKKAVRDWV------FGAGQSKRI---------WNELHKVVDASDVLLQVLDAR------ 232

  Fly   191 PP--SLYDYIINTLK-----KHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPRSR 248
            .|  :...||...|:     ||...:.||||||.......|.......||  .:...||......
  Fly   233 DPMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVPVWVTQRWVAILSAEYP--TIAFHASLQHPFG 295

  Fly   249 KGSQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDILDEISTAVEGELK 313
            ||:             :.|::::.                                     |:|.
  Fly   296 KGA-------------LINLFRQL-------------------------------------GKLH 310

  Fly   314 ISSSIDTTPHEHVKYHSGVLTIGCIGFPNVGKSSLINALKGRKVVSVSRTPGHTKHFQTIFLTPL 378
            :...              .:::|.||:|||||||:||||:.:||..|:...|.||.:|.|.|...
  Fly   311 LDKK--------------QISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGETKVWQYITLMKR 361

  Fly   379 VRLCDCPGLVFPSSTPKSLQVLLGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHL---PEDY--- 437
            :.|.||||:|:|::...:.:||.|                         ::|:.|   ||||   
  Fly   362 IFLIDCPGVVYPTAETDTEKVLKG-------------------------VVRVELVTNPEDYVDS 401

  Fly   438 ----------------DEW-SAVAISDAWAYKRGFLTAKAARPDRYRAANHILRMCLAGQQMLVL 485
                            :.| ::....:..|.|.|.| .|...||....|    ||.|...|...|
  Fly   402 LLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKL-LKGGEPDVTVTA----RMVLNDWQRGKL 461

  Fly   486 QFY--PPGF-----EERREHWLQHPDVGE-------------VKK---YQQVELD--------EP 519
            .||  |.||     :|.:|..:...|..|             |||   ::|:: |        |.
  Fly   462 PFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFVSESVKKAREFKQIQ-DFRKIRVGLEY 525

  Fly   520 ESETNGDTSSVCSDTADSE----------------DEDEDSSN--DETNADEEECGIREDAPR 564
            |.|...|...:..:..:.:                :|||:||:  ||..:::|   ..||..|
  Fly   526 EQEDVKDLDHIDLELLEQQKAERAAKKKARIHNLGEEDEESSDGADEFYSEDE---YNEDLQR 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 60/233 (26%)
GTPase_YlqF 165..474 CDD:274669 78/338 (23%)
Ns2NP_611232.1 NGP1NT 50..179 CDD:285379 21/104 (20%)
RbgA 206..485 CDD:224083 94/389 (24%)
NGP_1 214..370 CDD:206751 57/227 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435334
Domainoid 1 1.000 42 1.000 Domainoid score I753
eggNOG 1 0.900 - - E1_COG1161
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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