DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns4 and gnl3

DIOPT Version :9

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001002297.1 Gene:gnl3 / 321897 ZFINID:ZDB-GENE-030131-616 Length:561 Species:Danio rerio


Alignment Length:588 Identity:132/588 - (22%)
Similarity:225/588 - (38%) Gaps:134/588 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LQKRNTKGPPKYLRSTQESYEDSDVPETTRKLMEQPFARGGNR--NKNVNRYN-LQFYQEGKKEL 81
            :::...|...|.|...:.......|.|..|||.:....:|.:|  .|::...| ..|.:|..:|.
Zfish     1 MKRPKLKKASKRLSCAKRYKIQKKVREHNRKLKKAAKKQGISRKAKKDIGVPNSAPFKEEVLREA 65

  Fly    82 EQMKQEGFKPFEKLSPAQREVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQ 146
            ||.|||    .|.|....:.|..:..|            .:.|:|.|...:  .||  ...:|.:
Zfish    66 EQRKQE----LETLKEQNKIVKQQEKA------------AKRKKEKDAASS--VKE--PAAKKAK 110

  Fly   147 RAGDSKELSLFELNLET-----WRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYII-NTLKKH 205
            :|...||.....:.:::     .::|.:|:|.||:::.::|.|.......|.|.:.:: :..||.
Zfish   111 KAAKIKEARAAIVKVKSAKTFKCQELNKVIEASDVIVEVLDARDPLGCRCPQLEEMVLKHEGKKK 175

  Fly   206 AIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLPR-----SRKGSQRGPQA---HRRSM 262
            .:.:.||:|||....:..|..:..   .:.|..||.|.:..     .:|..|||..|   |.|: 
Zfish   176 LLFILNKIDLVPKDNLEKWLHFLE---AECPTFLFKSSMQLKDRTVQQKRQQRGTNAVLDHSRA- 236

  Fly   263 EGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDILDEISTAVEGELKISSSIDTTPHEHVK 327
                   ..|                ..:|.   .|..|::::...|||.               
Zfish   237 -------ASC----------------FGKDF---LLQTLNDLANKKEGET--------------- 260

  Fly   328 YHSGVLTIGCIGFPNVGKSSLINALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPSS 392
                :|.:|.:|||||||||:||:||..:..:.....|.|:..|.:.:|..|::.|.||::...|
Zfish   261 ----MLKVGVVGFPNVGKSSIINSLKEMRACNAGVQRGLTRCMQEVHITKKVKMIDSPGILAALS 321

  Fly   393 TPKSLQVLLGSFPISQLAVPYRSLKFLGEHLNLPQLLRLHLPEDYDEWSAVAISDAWAYKRGFLT 457
            .|.|...|.......:...|..:::.|.:..|...::..:...||.  |::.....:|.|.|.| 
Zfish   322 NPGSAMALRSLQVEEKEESPQEAVRNLLKQCNQQHVMLQYNVPDYR--SSLEFLTTFAMKHGLL- 383

  Fly   458 AKAARPDRYRAANHILRMCLAGQQMLVLQFYPPGFEERR--EHWLQHPDVGEVKKYQQVELDEPE 520
            .|....|...||...|......:    |.:| ....||:  ..:|....|.|::  ..|::|..:
Zfish   384 QKGGVADTELAATTFLNDWTGAK----LSYY-SRVPERQGLPSYLSDAIVTELQ--SDVDMDAVK 441

  Fly   521 S--------------------ETNGDTSSV-------------CSDTADSEDEDEDSSNDETNAD 552
            .                    :::|.|:.|             .:.|.|:|:|..|::   ||.|
Zfish   442 KGNENVKRSVRFPNLASCISFDSSGPTAGVLDVSELPKEILTKAATTTDAEEEKMDTT---TNTD 503

  Fly   553 EEE 555
            |.|
Zfish   504 EPE 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 58/240 (24%)
GTPase_YlqF 165..474 CDD:274669 76/317 (24%)
gnl3NP_001002297.1 GN3L_Grn1 17..85 CDD:285863 20/71 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..58 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..110 8/49 (16%)
GTPase_YlqF 128..411 CDD:274669 79/339 (23%)
Nucleostemin_like 144..316 CDD:206753 53/220 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..532 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1161
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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