DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns4 and Lsg1

DIOPT Version :10

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001013439.1 Gene:Lsg1 / 288029 RGDID:1309089 Length:655 Species:Rattus norvegicus


Alignment Length:520 Identity:159/520 - (30%)
Similarity:238/520 - (45%) Gaps:115/520 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GFKPFEKLSPAQR-EVDDRYFAGCDFPVRPPWTLTESKEELDRTENRYFKEYVDELQKKQRAGDS 151
            |...||:....:| ..::|.|. | .|.||.|....|.|||.:.|...|.::..:|   .|..:.
  Rat    90 GLLSFEESQRIKRLHEENRQFL-C-IPRRPNWDRKTSPEELKQAEKDNFLKWRRQL---VRLEEE 149

  Fly   152 KELSL--FELNLETWRQLWRVLEFSDILLIIVDVRYATLMFPPSLYDYI--INTLKKHAIVVFNK 212
            ::|.|  ||.||:.|||||||:|.|||::.|||.|...|.....|..|:  |:..|::.|:: ||
  Rat   150 QKLILTPFERNLDFWRQLWRVIERSDIVVQIVDARNPLLFRCEDLECYVKEIDAAKENVILI-NK 213

  Fly   213 VDLVEPHAVVAWRQYFRDRYPQLPVVLFASFLP-------------RSRKGSQRGPQAHRRSMEG 264
            .||:.....|||..:|.....:   |:|.|.|.             .|..|.....::...|::|
  Rat   214 ADLLTAEQRVAWAVHFEKEGVK---VIFWSALAETVHLNGDSKDEVNSVAGEANSSESEDSSLDG 275

  Fly   265 -------VYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDILDEISTAVEGELKISSSIDTTP 322
                   ::.:.:|.    :.:.|.:.:|. .:||...|.....:|.|...||:.:.....|...
  Rat   276 NEIPHRDLFLLSEES----ESDDDDSEYED-CQEDEEEDWQTCSEEDSNPEEGQEEGGCDRDQKE 335

  Fly   323 H---------------------EHV-----------KYHS------GVLTIGCIGFPNVGKSSLI 349
            |                     .|:           |.|:      |.||:|.:|:|||||||.|
  Rat   336 HGPEDSEAQSRASPENSQMSNKSHLVSKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTI 400

  Fly   350 NALKGRKVVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPS--STPKSLQVLLGSFPISQLA-- 410
            |.:.|.|.||||.||||||||||:::.|.:.||||||||.||  || |:..:..|..||.|:.  
  Rat   401 NTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSFVST-KAEMICSGILPIDQMRDH 464

  Fly   411 VPYRSLKFLGEHLNLPQL-------LRLHLP-EDYDEW---SAVAISDAWAYKRGFLTAKAARPD 464
            ||..||..    .|:|:.       :.:..| ||.|.:   ::..:..|:...|||:||. .:||
  Rat   465 VPPVSLVC----QNIPRRVLEATYGINIIKPGEDEDPYRPPTSEELLTAYGCMRGFMTAH-GQPD 524

  Fly   465 RYRAANHILRMCLAGQQMLVLQFYPP------GFEERREHWLQHPDVGE--------VKKYQQVE 515
            :.|:|.:||:..:.|:   :|..:||      .|:.:....|::...||        .:|.:|||
  Rat   525 QPRSARYILKDYVRGK---LLYCHPPPGKDPVAFQHQHRQLLENKIKGEELRLQPGKTQKAKQVE 586

  Fly   516  515
              Rat   587  586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 91/286 (32%)
RbgA 204..474 CDD:440775 101/342 (30%)
Lsg1NP_001013439.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
HSR1_MMR1 163..441 CDD:206750 91/286 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..359 16/110 (15%)
RbgA <364..541 CDD:440775 73/185 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 625..655
Blue background indicates that the domain is not in the aligned region.

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