DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns4 and C53H9.2

DIOPT Version :9

Sequence 1:NP_610055.1 Gene:Ns4 / 35338 FlyBaseID:FBgn0032882 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_740787.2 Gene:C53H9.2 / 171749 WormBaseID:WBGene00016907 Length:554 Species:Caenorhabditis elegans


Alignment Length:575 Identity:162/575 - (28%)
Similarity:239/575 - (41%) Gaps:156/575 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MLQKRNTKGPPKYLRSTQESYEDSDVPETTRKLMEQPFARGGNRNKN-------VNRYNLQFYQE 76
            |.::|.:...|..|..:..:...:| .|.||| ..|.....||..:|       ||.|......|
 Worm     1 MTKRRASNKKPSGLNKSLGNSLSND-REKTRK-SHQRAKYDGNDIENPAFMEHEVNHYIDSVTDE 63

  Fly    77 -------GKKELE----QMKQEGFKPFEKLS----PAQREVDDRYFAGCD----------FPVRP 116
                   .|.||.    ..::|.||..||.|    |.:.:    |.|..|          .|.||
 Worm    64 TSLEEFLAKAELAGTEFTAEKEQFKIIEKNSAIVVPTRLD----YRANLDLQKENEHRLRIPRRP 124

  Fly   117 PWTLTESKEELDRTENRYFKEYVDELQKKQRAGDSKELSLFELNLETWRQLWRVLEFSDILLIIV 181
            ...|.|:.|:|.:.||..|.::..:|.:.|.. |...|:.||.|.:.||:||||:|.|||::.||
 Worm   125 AKELWENMEDLTKLENEAFLQWRSDLSELQEV-DGLVLTPFERNPDMWRELWRVVEKSDIIVQIV 188

  Fly   182 DVRYATLMFPPSLYDYI--INTLKKHAIVVFNKVDLVEPHAVVAWRQYFRDRYPQLPVVLFASFL 244
            |.|...|.....|.||:  ::..|:..::| ||.||::|....:||:||...  .:.|:.:::. 
 Worm   189 DARNPLLFRSKDLDDYVKEVDPAKQILLLV-NKADLLKPEQQASWREYFEKE--NIKVIFWSAI- 249

  Fly   245 PRSRKGSQRGPQAHRRSMEGVYNIYKECQRYVQGEVDLTTWEQKIREDMRSDQLDILDEISTAVE 309
                                                              .:.||.:||  .|||
 Worm   250 --------------------------------------------------DEVLDPIDE--DAVE 262

  Fly   310 GELKISSSIDTTPHEHVKYHSGVLT------------------IGCIGFPNVGKSSLINALKGRK 356
                 :|:..|:.|..|.....::.                  :|.:|:|||||||.||.|.|.|
 Worm   263 -----TSNPSTSTHMFVTNKDELIAKFKELGHVSDEPSAKPVMVGMVGYPNVGKSSTINKLAGGK 322

  Fly   357 VVSVSRTPGHTKHFQTIFLTPLVRLCDCPGLVFPS-STPKSLQVLLGSFPISQLAVPYRSLKFLG 420
            .||||.|||.|:|||||.:...:.||||||||.|| |..:|...|.|..|:.|:.          
 Worm   323 KVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLNGILPVDQMR---------- 377

  Fly   421 EHLNLPQLLRLHLP------------EDYDEWSAVAISDAWAYKRGFLTAKAARPDRYRAANHIL 473
            :|.....||...:|            .:....||:.:.::.|:.|||: |.:..||..|||..:.
 Worm   378 DHFGPTSLLLSRVPVHVIEATYSIMLPEMQSPSAINLLNSLAFMRGFM-ASSGIPDCSRAARLMF 441

  Fly   474 RMCLAGQQMLVLQFYPPGFEERREHWLQHP-----DVGEVK-----KYQQVELDE 518
            :..::|:  |:....|||.|:.....:.:|     |:|.|:     |.|.:|.||
 Worm   442 KDVVSGK--LIWAAAPPGVEQEEFDRISYPDKKTRDIGRVQMEKLAKLQLLEGDE 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns4NP_610055.1 HSR1_MMR1 163..390 CDD:206750 76/246 (31%)
GTPase_YlqF 165..474 CDD:274669 99/341 (29%)
C53H9.2NP_740787.2 RbgA 145..476 CDD:224083 114/405 (28%)
HSR1_MMR1 171..356 CDD:206750 76/245 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55394
OrthoDB 1 1.010 - - D206558at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.930

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