DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and OCT1

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_565059.2 Gene:OCT1 / 843656 AraportID:AT1G73220 Length:539 Species:Arabidopsis thaliana


Alignment Length:435 Identity:114/435 - (26%)
Similarity:196/435 - (45%) Gaps:45/435 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 WEYNTSVVW-----SSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVC 212
            ||      |     .::|.:::|:|.......:.......|...|..::|.|.|      |:|..
plant   112 WE------WIGPKSDTVVSEWNLICQHKFLVAVPSTLFFIGSLFGSGVYGYLAD------SWFGR 164

  Fly   213 LATLLAGSLMT-------SLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMT 270
            ..|||...::|       |.|.:.|.:|..|...|.....:.....:::.|:||:.:|..|....
plant   165 KKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGIGSCCIVLATEIVGKKWRGQVGQYG 229

  Fly   271 CTFYTSGIMLLSGVTYLER-DWVRLSYITS-LPF-YAYFLYMFVMPESPRWLLMRGRLEEALKIL 332
            ..|:|.|.:.|..:.|||| .|..|..|.| ||. ||..|..|.. |||||||::||.:||:.:|
plant   230 FFFFTLGFLSLPLMAYLERKSWRNLYRIISFLPLGYAVCLLPFAY-ESPRWLLVKGRNKEAMVVL 293

  Fly   333 ERMAKVNGREFPEAVHLKLEAQIRRDKLKKQKKKMANVGLADLCRTPNMRLKTILITLSWFANET 397
            :::|::||::.|..:.|......|.|:....:|         ..:|.....:.|::.::.|.:..
plant   294 KKLARLNGKQLPADLSLVDPIPERDDQTSSSEK---------FWKTKWAVKRIIMVMMAGFGSGF 349

  Fly   398 VYLGLSYYGPALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLP 462
            ||.|:......|..|.|::..::|::|.|:.....:.:....||...|.|..|.|.||::..:|.
plant   350 VYYGIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLS 414

  Fly   463 DD----AVDETLVLYLVSKAL----LSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIP 519
            ..    |:.....|.|..:|:    .|.::.::|.:..||:||.||...:........||....|
plant   415 IHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLGASAAP 479

  Fly   520 FITYLGKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEE 564
            .:..||:::..:..::.|..|:|.|:..|.|.||.:..|.:|:.:
plant   480 LLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQ 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 113/430 (26%)
MFS 182..551 CDD:119392 103/386 (27%)
OCT1NP_565059.2 MFS_OCT_plant 102..511 CDD:340936 109/420 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I1021
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 1 1.000 - - mtm1022
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.150

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