DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and OCT4

DIOPT Version :10

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_188702.2 Gene:OCT4 / 821613 AraportID:AT3G20660 Length:526 Species:Arabidopsis thaliana


Alignment Length:598 Identity:164/598 - (27%)
Similarity:274/598 - (45%) Gaps:107/598 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDIEDNDGDEYDELSELRQRHKPESQPSVDEAFDLDDLLPT-IGEFGKYQ-KLLVFGICLPACI 63
            |...||.:|:  |....|.::...:.:...:|...:|::|.. .||||::| |..|.     .||
plant     1 MESPEDRNGN--DVRQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVL-----TCI 58

  Fly    64 PCGFCAFNQLFM--ADTPDDYWCRIPELLDLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWTQL 126
            .....||:.:.|  ||...::.|                           |.|.|....:|.   
plant    59 AWALEAFHTMVMIFADQEPEWRC---------------------------VGSDCRVGSLNC--- 93

  Fly   127 LESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVVWSSIVIDFDLVCDQDIYPTIGL--AALNTGG 189
                |.|                |..||: |:...||.|.::.|:|. |.| .:||  |....|.
plant    94 ----ELD----------------PSSWEW-TAGKGSSTVSEWGLICG-DKY-KVGLVQALFFAGC 135

  Fly   190 PVGVYLFGLLND-RGGRRLSY-FVCLATLLAGSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFI 252
            .:|..:||.|:| :.||:.|. .||:...:.| :.|:.|.::||:...|.:.|.:...|....|:
plant   136 MIGAGVFGHLSDSKLGRKGSLTVVCIINAIFG-IATAFSPNYWTYVVLRFLTGFSTGGVGLTAFV 199

  Fly   253 ISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMP---E 314
            ::.|.:|.:.|....:.|..|:::||.:|||:.|:.|.|..|..::|||...:.|  .|:|   |
plant   200 LATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFRSWRELFIVSSLPSLLFLL--IVIPFISE 262

  Fly   315 SPRWLLMRGRLEEALKILERMAKVNGREFPEAVHLKLEAQIRRDKLKKQKKKMANVGLADLCRTP 379
            ||||.|:||:::||:|::..:||.|||..|..|.|.|:..:..:  ..::.......|.|:..:|
plant   263 SPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALDDDVENN--NGERNTAVEGSLKDVILSP 325

  Fly   380 NMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPL 444
            .||::.::.....|....||.|||.....|.||.|::.|::||.|:|::......:|.:||: ||
plant   326 LMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYGRK-PL 389

  Fly   445 SL-SMILGGVACVITVML----PDDAVDETLVLYLVSKAL----LSASFLIIYPFAGELYPTQVR 500
            |: :.....|.|::...:    |..:|      .:||..|    ::.::.:::.:..||:||.||
plant   390 SIGTQWFSCVFCLVGFSVWGAGPWKSV------RMVSGVLGIFGMAGTYNLLFIYIAELFPTVVR 448

  Fly   501 GIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTI--- 562
            ...:|.::....:|.|..||:..||::   ||..:.....::||.....|||||:..|..|:   
plant   449 NAALGCATQAAQMGAILAPFVVVLGEE---LPFGVFAVCGLVGGGLAFYLPETLNKPLYDTMFGM 510

  Fly   563 ---------EEGE 566
                     |.||
plant   511 HEAESESNRERGE 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 MFS_SLC22 152..551 CDD:340875 123/414 (30%)
xylE <306..>342 CDD:182225 18/38 (47%)
OCT4NP_188702.2 MFS_OCT_plant 90..496 CDD:340936 127/446 (28%)

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