DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and oct2

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001107932.1 Gene:oct2 / 797890 ZFINID:ZDB-GENE-080204-92 Length:554 Species:Danio rerio


Alignment Length:557 Identity:164/557 - (29%)
Similarity:267/557 - (47%) Gaps:24/557 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLDDLLPTIGEFGKYQK-LLVFGICLPACIPCGFCAFNQLFMADTPDDYWCR---IPELLDLPLE 95
            :.|:||...|:||.||| :.|.| .||..: ..|.....:|:..|| |:||:   :.|......|
Zfish     3 NFDELLQHAGDFGFYQKRISVLG-SLPILL-LAFVLIGVVFLGYTP-DHWCKTASLQEKCGFSEE 64

  Fly    96 QRKSLSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVV 160
            |.:.|::|:  ......:|||    |.:...|.:|..........|.|..|..|.:||.:|.:  
Zfish    65 QVRDLTVPR--TGARGAFSKC----VKFDDALRNGSALSCNISIFNNSTHLSACNEGWTFNEN-- 121

  Fly   161 WSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTSL 225
            .::||.:|.|||:......:...:|..|..:|..:.|.|.||.||:..:...:..|.........
Zfish   122 RTTIVTEFSLVCEDSWLADLNQVSLAGGFFIGALVTGYLADRFGRKSCFIASIFGLGVSGTCIIF 186

  Fly   226 SKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERD 290
            |..:......|.:.|......:...:::.:|..|.|.|.||:||:.|||:.|::||..:.|....
Zfish   187 SPYYPLLLFFRCLQGFFAKGAWTATYVLIIEFFGSNNRKFVSVMSRTFYSLGLVLLPALAYYIPS 251

  Fly   291 WVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVHLKLEAQI 355
            |..|....:||.:.:.:|.:|:||||||||.:.:.:|||.|::.:||.|.|..||..|       
Zfish   252 WRNLQLAMTLPTFIFLIYHWVIPESPRWLLSQRKTKEALSIVKSIAKCNKRSLPEDFH------- 309

  Fly   356 RRDKLKKQKKKMANVGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLS 420
            ..|.|.::::::......||.:||.||..|.::..:||....|:.||.......|.|.::.|.:|
Zfish   310 EMDLLIEKQEEIMRPSYKDLFKTPKMRKHTFILIYAWFTGAVVFQGLVLRLGITGDNVFLDFLIS 374

  Fly   421 AVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKALLSASFL 485
            ||||||:.|..::.:|..|||..::....:||.||:....:..:.......:.:|.:..::....
Zfish   375 AVVELPTGLIFYFLVDRIGRRPLMATVNFIGGAACLAVPFISPNISWLRRTIAIVGRLAVAIGNE 439

  Fly   486 IIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITY-LGKDNLKLPLVIMGFLSMLGGMTGLR 549
            .:.....|||||.:|.:|:...|....:|.:..|||.| |.....:|||::.|.:|:|.....:.
Zfish   440 TVNFANTELYPTPLRNLGVSVCSSASDIGAVVAPFILYRLASIWQELPLLVYGVMSVLYSGLVML 504

  Fly   550 LPETLHHRLPQTIEEGEEFGKNWQFKDCCRCAQKPEI 586
            |||.....||:|:::.|......:.|: ...||.|||
Zfish   505 LPEMKGVDLPETVDDVENLRSRHKRKE-KDGAQFPEI 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 153/521 (29%)
MFS 182..551 CDD:119392 107/369 (29%)
oct2NP_001107932.1 2A0119 12..516 CDD:273328 153/521 (29%)
MFS 123..506 CDD:119392 113/389 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3B9N9
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.920

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