DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and slc22a15.2

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001039179.1 Gene:slc22a15.2 / 734018 XenbaseID:XB-GENE-5824718 Length:487 Species:Xenopus tropicalis


Alignment Length:549 Identity:154/549 - (28%)
Similarity:252/549 - (45%) Gaps:101/549 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLDDLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQLFMADTPDDYWCR---------IPELL 90
            |||:....|||||..||.|.           .|....|:::|       |:         :||.|
 Frog     2 DLDEAFLYIGEFGCCQKRLT-----------AFLTLLQVYVA-------CQSMLIVLVGAVPEYL 48

  Fly    91 DLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEY 155
                           :||:::..||     ..:|:.|.  :.::.|::.  :.|.||| .:.::.
 Frog    49 ---------------IDNEDISASK-----EEYTKHLH--DTNNFTSIV--SEWHLIK-NEAYKV 88

  Fly   156 N--TSVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLA 218
            |  :|:.::.::|                         |..|||.|:|:.|||..|...|...:.
 Frog    89 NLASSLFFAGLLI-------------------------GNILFGPLSDKLGRRPVYLSGLFFDIT 128

  Fly   219 GSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSG 283
            ....|:|:..:..:|.||..||:....:..:.|:::.|.||::|.:....:|...:..||...:.
 Frog   129 FGYCTALAPSYEVFAVSRFFVGIMNGGMALVSFVLTQEYVGKSYWALTGSLTNLIFAVGIAFYAL 193

  Fly   284 VTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVH 348
            :.:..|:|..|:::.:.|...:||..|::|||||||...|...||..:|:.||..||.|.|..  
 Frog   194 LGFYIRNWRTLAFVANSPGIFFFLLSFLLPESPRWLYSHGYTTEAEGVLQSMAVGNGVERPVV-- 256

  Fly   349 LKLEAQIRRDKLKK---QKKKMANVGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALG 410
                      |||.   ...|.|: .:.||.:...:|.:|||:...|:....||.||:.....|.
 Frog   257 ----------KLKSCPGTSSKSAH-SVFDLVKYGVLRWRTILLMYIWYVCSLVYYGLTLNAGELK 310

  Fly   411 TNQYVSFFLSAVVELPSYLCCWYFMD-TW-GRRWPLSLSMILGGVACVITVMLPD---DAVDETL 470
            .|.|::..|..:||:|::..|.||:: :| |||...:..:...|.||:.|:.||:   |.::.| 
 Frog   311 GNLYLNVALYGLVEVPAFPLCLYFIEKSWSGRRKATAGFLGFAGFACIFTIFLPETNGDLLNPT- 374

  Fly   471 VLYLVSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVI 535
            ||.|..|..:||:|.::|.:..|||||.||..|:|..:.....|.|..|||..:...|..:|.|.
 Frog   375 VLALFGKLSVSAAFNVVYIYTSELYPTVVRNAGLGVCAMACRFGGILSPFIPTMKSLNPSMPFVA 439

  Fly   536 MGFLSMLGGMTGLRLPETLHHRLPQTIEE 564
            .|...:..|:..|.||||.:..:.::||:
 Frog   440 FGISGISAGILSLLLPETRNKPIAESIED 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 148/535 (28%)
MFS 182..551 CDD:119392 116/376 (31%)
slc22a15.2NP_001039179.1 MFS 48..455 CDD:391944 131/470 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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