DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and Slc22a23

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_072146.1 Gene:Slc22a23 / 64559 RGDID:620302 Length:689 Species:Rattus norvegicus


Alignment Length:599 Identity:141/599 - (23%)
Similarity:232/599 - (38%) Gaps:103/599 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLD-DLLPTIGEF-GKYQKLLVFGICLPACIPCGFCAFNQLFMADTPDDYWC----RIPELLDLP 93
            |.| .:||.:|.. |.|||.||....:||.. .||..|:..|:.|.| ::||    :..||....
  Rat    79 DYDGSVLPFLGGLGGGYQKTLVVLTWIPALF-IGFSQFSDSFLLDQP-NFWCHGAGKGTELAGAT 141

  Fly    94 LEQRKSLSIPKELDNDELVYSKCYTYG--VNWTQLLESGEEDDLTTMEPNASW------------ 144
            :..|                     :|  .|||        ....|....|||            
  Rat   142 VTGR---------------------WGDMGNWT--------SPSATPFSTASWGTTSNRSNSSDT 177

  Fly   145 PLIKCPQG------------WEY--NTSVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYL 195
            |.:..|.|            |:|  .|.:| .::|..:|||||......:...:|..|...|..:
  Rat   178 PPLPSPPGKGNNDSNCECHAWDYGIRTGLV-QNVVSKWDLVCDNAWKVHVAKFSLLVGLIFGYLI 241

  Fly   196 FGLLNDRGGRRLSYFVCLATLLAGSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGE 260
            .|.:.|..|||......:..:|...|..:||.:...::..|...|..:..:....:.:.:||...
  Rat   242 TGCIADWVGRRPVLLFSVIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYALRIELCPP 306

  Fly   261 NYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRL 325
            ..|..:|::......:|..|:.|:..|.|||..|..:...||....||..:.|||.|||:...:.
  Rat   307 GKRFIITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATQQF 371

  Fly   326 EEALKILERMAKVNGREFPEAVHLKLEAQIRRDKLKKQKKKMANVGLADLCRTPNMRLKTILITL 390
            |.|.|::..:.:.|... ||:....:..::.::..::.||    |.:..:..|.|:....:::.:
  Rat   372 ESAKKLILYLTQKNCVS-PESDIKGVMPELEKELSRRPKK----VCIVKVVGTRNLWKNIVVLCV 431

  Fly   391 SWFANETVY-------LGLSYYGPALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSM 448
            :......::       :|.....|.| .|.|..::..|.:.|.|.|.....:...|||..|.|.|
  Rat   432 NSLTGYGIHHCFARSMMGHEVKVPLL-ENFYADYYTMASIALASCLAMCLVVRFLGRRGGLLLFM 495

  Fly   449 ILGGVACVITVML----------PDDAVDETLVLYLVS--KALLSASFLIIYPFA---------- 491
            ||..:|.::.:.|          ||..:...|.:.:..  |...|.:|.|:..||          
  Rat   496 ILTALASLLQLGLLNLIGKYSQHPDSELQLKLAVGMSDSVKDKFSIAFSIVGMFASHAVGSLSVF 560

  Fly   492 --GELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGLRLPETL 554
              .|:.||.:|..|:|......|.|::..|.|....:....|..:|....:::..:..|.|||:.
  Rat   561 FCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESR 625

  Fly   555 HHRLPQTIEEGEEF 568
            ...||:.|..||.:
  Rat   626 DQNLPENIANGEHY 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 134/580 (23%)
MFS 182..551 CDD:119392 88/399 (22%)
Slc22a23NP_072146.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..188 6/25 (24%)
MFS_SLC22A23 187..608 CDD:341002 97/427 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

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