DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and Orct

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001262908.1 Gene:Orct / 42891 FlyBaseID:FBgn0019952 Length:548 Species:Drosophila melanogaster


Alignment Length:579 Identity:196/579 - (33%)
Similarity:311/579 - (53%) Gaps:47/579 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 DDLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQL---FMADTPDDYWCRIPELLDLPLEQRK 98
            ||::..:||||.|||.:.:.:||||.:    |||::|   |:...| |:.|.      ||.|...
  Fly     4 DDVITHLGEFGPYQKRIYYLLCLPAIV----CAFHKLAGVFLLAKP-DFRCA------LPYENGS 57

  Fly    99 SLSIPKELDNDELVY---SKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVV 160
            ...:...|.|  |.|   .:|..|.|::|       |:.|....|.:|.....| ..:.|:.|..
  Fly    58 IYELSPHLWN--LSYPENERCSYYDVDYT-------EEYLNGSIPRSSNETKTC-SSYVYDRSKY 112

  Fly   161 WSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTSL 225
            .:|.|.:::|||.:.:......:....|..:|..:||.::|:.||:.::|..|...|...::.::
  Fly   113 LNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAV 177

  Fly   226 SKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERD 290
            :.:::::..||:|||.|...|:.:.::|:||:||.:||.|..|....|::.|.||.:|..|...|
  Fly   178 APEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHD 242

  Fly   291 WVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVHLKLEAQI 355
            |..|....:||...:..|.:::|||.|||||:||.:||..|:|:.||.|..|.|..::.:|..::
  Fly   243 WRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIYEQLVDEV 307

  Fly   356 RRDKLKKQKKKMANVGLA---DLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSF 417
            .  :.|||.:..|:...|   ||.|.||:|.||:||...||.|..||.|||:....||.||.|:|
  Fly   308 A--EKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWNTNNLGGNQLVNF 370

  Fly   418 FLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKALLSA 482
            .:|..||:|.|....:.::.||||..|..:|::.|::.:.|:.:|.|.....:...::.|..:::
  Fly   371 MISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSDMNWLIVACAMIGKLAITS 435

  Fly   483 SFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTG 547
            |:..||.|:.|.:||.||.:|:||||.:..:|.|..|::..||:....|||:|.|.||:..|:..
  Fly   436 SYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLS 500

  Fly   548 LRLPETLHHRLPQTIEEGEEFGKNWQFKDCCRCAQKP---EILSQPASYENLDVLAGSS 603
            |.|||||:..:|:|||:||.|||            ||   |...:..:.|...:|.|.|
  Fly   501 LLLPETLNKPMPETIEDGENFGK------------KPAPQETAEEGGTQELSGMLNGKS 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 179/525 (34%)
MFS 182..551 CDD:119392 131/371 (35%)
OrctNP_001262908.1 2A0119 11..514 CDD:273328 179/525 (34%)
MFS 135..491 CDD:119392 126/357 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I351
eggNOG 1 0.900 - - E33208_3B9N9
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I1021
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 1 1.000 - - mtm1022
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
87.960

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