DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and CG4462

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_650849.1 Gene:CG4462 / 42376 FlyBaseID:FBgn0038752 Length:573 Species:Drosophila melanogaster


Alignment Length:566 Identity:122/566 - (21%)
Similarity:217/566 - (38%) Gaps:117/566 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 DDLLPTIGEFGKYQ--KLLVFGIC-LPACIPCGFCAFNQLFMADTPDDYWCRI---PELLD---- 91
            |.:...:|:||.:|  .:|:..:| :||.          .|||       |.|   |||..    
  Fly    41 DVIADVVGDFGIWQLRTILIIFLCKIPAA----------WFMA-------CIIFTGPELYPGSEF 88

  Fly    92 ------LPLEQRKSLSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCP 150
                  |......|.||.   ||      :||..           :|...|:.|         |.
  Fly    89 TCDTSYLTSSSNSSFSIS---DN------QCYVL-----------DESTGTSSE---------CE 124

  Fly   151 QGWEYNTSVVWSSIVIDFDLVCDQDIYPT----IGLAALNTGGPVGV-YLFGLLNDRGGRRLSYF 210
            |   :|....:.|:::.|:|||.:||:..    ..|..:..||.:|. .:.|:     ..|.:|.
  Fly   125 Q---FNYVSSFDSLIMQFNLVCLRDIFVAWTQYWHLFGVLVGGVMGTKMMLGI-----SPRSTYC 181

  Fly   211 V-CLATLLAGSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFY 274
            | .:|.:|.| ::|..::||......|.:..:....::.....|..::....:|....::..||:
  Fly   182 VGAVAQILCG-VVTGYARDFSLHCAFRCLSAVCCAIMFTAGQAIFADITAGMHRIGAIILYDTFW 245

  Fly   275 TSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLM----RGRLEEALKILERM 335
            :.|::||.|::.....|..:....:.|.....|.::..|:||||||.    |..::...:||...
  Fly   246 SIGVILLPGLSSFFNSWSLIYVGITFPTIMLILLLYWTPDSPRWLLRHAADRFSIDNVEQILREG 310

  Fly   336 AKVNGREFPEAVHLKLEAQIRRDKLKKQ----------KKKMANVGLADLCRTPNMRLKTILITL 390
            |.:|.|.|......:.:.:...::||.|          |.|.|...:.    ..::.|...:|..
  Fly   311 AAINDRSFKIPPDFRQQLEQLSERLKAQPPPAPWTELWKGKRAKTHMV----AAHLALAFFVINF 371

  Fly   391 SWFANETVYLGLSYYGP---ALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLS--LSMIL 450
            ..........|..|..|   |:|.::.:..||:....|..        :.|  :|..:  .:::.
  Fly   372 MGMLLNIRSFGRDYLVPNTIAMGFSEIIGCFLALHFTLKH--------NKW--KWQCAGVFNILA 426

  Fly   451 GGVACVITVMLPDDAVDETL------VLYLVSKALLSASFLIIYPFAGELYPTQVRGIGIGASSY 509
            |.:.|:..:....|::|..|      ::..:.||.:|.:..:|.....||.|...:.:.:.:...
  Fly   427 GILGCMGWIFTNADSMDADLKVSLWMIIATIPKAAVSCAQSMILACMNELMPANKKQLFVFSVVT 491

  Fly   510 IGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGM-TGLRLPETL 554
            ...:.|:..||...|.|.:..:.|......|:|||: |.|.|...|
  Fly   492 WARVWLLSAPFFNVLRKIDTAMSLTSYCVFSILGGICTSLLLTPRL 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 121/559 (22%)
MFS 182..551 CDD:119392 82/396 (21%)
CG4462NP_650849.1 2A0119 <126..532 CDD:273328 89/425 (21%)
MFS 149..>284 CDD:119392 26/140 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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