DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and CG16727

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_650818.1 Gene:CG16727 / 42338 FlyBaseID:FBgn0038719 Length:545 Species:Drosophila melanogaster


Alignment Length:561 Identity:141/561 - (25%)
Similarity:250/561 - (44%) Gaps:67/561 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLDDLLPTIGEFGKYQ--KLLVFGICLPACIPCGFCAFNQLFMADTPDDYWCRIPELLDLPLEQR 97
            |.|.:|...|.||::|  .|:::|.   ..|......|:|..:..|| ::||...:|:.|...:.
  Fly     2 DFDRVLEKCGNFGRFQFVILILYGY---TNILSSLHYFSQTLITFTP-EHWCSHDDLMGLGAAEL 62

  Fly    98 KSLSIPKELDNDELVYSKCYTYG--VNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVV 160
            :|:       ...:.:..|....  :|.|.:  :.||               .| |.|.:.....
  Fly    63 RSI-------YSNVSHPSCTLLSEVINGTGV--ASEE---------------SC-QDWIFERENG 102

  Fly   161 WSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTSL 225
            :.|:..:...|||:...|.:|.:....|..||...||.|:|..||..:..:...:...|..:||.
  Fly   103 YESLTTELKWVCDKSHQPAVGQSFFFLGSVVGTISFGFLSDHIGRLPAMLMAALSGATGDFITSF 167

  Fly   226 SKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSF-VTVMTCTFYTSGIMLLSGVTYLER 289
            ......:|.||.:.||:...:|.:.:|:..|.:....|:| :.::...||..|:|....:.....
  Fly   168 VHTLPWFAFSRFVSGLSTDTMYYLMYILVFEYLSPKRRTFGLNIILAVFYCFGLMTSPWIAMWIG 232

  Fly   290 DWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGRE-----FPEAVHL 349
            :|.|..::.|||.....:|..::.||.:|||.:.:.:||:..|:::||.|||:     |.|.|..
  Fly   233 NWRRYLWLASLPALGVLIYPLLICESAQWLLTKKKYDEAVACLKKVAKFNGRQVEDSVFDEFVKH 297

  Fly   350 KLEAQIRRDKLKKQKKKMANVGLADLCRTPNMR-------LKTILITLSW-FANETVYLGLSYYG 406
            ..|......||.||......     :.:||.:|       :|:::||||: ..|..:        
  Fly   298 YREKMNEESKLNKQMDTFLG-----MFKTPRLRRFTTTLLVKSVIITLSYDVINRNM-------- 349

  Fly   407 PALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVIT---VMLPDDAVDE 468
            ..||::.:..|.|::.|.||:........:..||:.....::::|.:...:|   :.:.|.:.:.
  Fly   350 EGLGSSPFKLFSLTSSVYLPAGFTILLLQNKIGRKGMACGALLVGAIITAVTGFLIAVLDPSENA 414

  Fly   469 TLVLYLVSKALL--SASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPF-ITYLGKDNLK 530
            .|:..:|.....  :.|:.....:|.|:.||.|||..: ::.::.||....:.| :.||.:....
  Fly   415 VLLALMVGLGRFGTTVSYDAEIQYAAEIIPTSVRGQAV-SNIHVVGLASSSLAFYVIYLAQYYKP 478

  Fly   531 LPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEEGEEFGKN 571
            ||.:.:..|..||.:..|.||||||.:||:|:.:||.|..|
  Fly   479 LPSIFISVLMFLGALLCLTLPETLHKKLPETLADGERFAMN 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 133/540 (25%)
MFS 182..551 CDD:119392 95/388 (24%)
CG16727NP_650818.1 2A0119 11..509 CDD:273328 133/540 (25%)
MFS 125..499 CDD:119392 95/387 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I351
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 86 1.000 Inparanoid score I1789
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
55.060

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