DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and Slc22a20

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_941052.1 Gene:Slc22a20 / 381203 MGIID:2685809 Length:556 Species:Mus musculus


Alignment Length:570 Identity:173/570 - (30%)
Similarity:269/570 - (47%) Gaps:50/570 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 DLLPTIGEFGKYQKLLVFGICLPACIPCGFCA---FNQLFMADTPDDYWCRIPELLDLPLEQRKS 99
            |||..:|..|::|  ||:...|  .:|||..|   |.|.|.|..|..: |:.|.....|......
Mouse     5 DLLDALGGVGRFQ--LVYTALL--LLPCGLLACHTFLQNFTAAAPPHH-CQHPANYTEPTTNVSG 64

  Fly   100 L----SIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIK---CPQGWEYNT 157
            :    :||.....|.   ..|..|           .|.....::||||...:.   |..||.|:.
Mouse    65 VWLRAAIPLNQHGDP---EPCRRY-----------VEPQWALLKPNASSHGVATEGCKDGWVYDR 115

  Fly   158 SVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLM 222
            |:..|:||:::||||:......:..:...:|..||..|||.|.||.||:.........|......
Mouse   116 SIFPSTIVMEWDLVCEARTLRDLAQSIYMSGVLVGAALFGGLADRLGRKAPLVWSYLQLAVSGAA 180

  Fly   223 TSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGE----NYRSFVTVMTCTFYTSGIMLLSG 283
            |:....|..:...|.::|:|...:    .:.||.||.|    ..|:...::....:|.|.::|:|
Mouse   181 TAYVGSFSAYCVFRFLMGMTFSGI----ILNSLSLVVEWMPTRGRTVAGILLGFSFTLGQLILAG 241

  Fly   284 VTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVH 348
            |.||.|.|..|.:..|.||..:|||.:.:|||.||||:.|:.::|::.|:::|.:|||   :|..
Mouse   242 VAYLIRPWRWLQFAVSAPFLVFFLYSWWLPESSRWLLLHGKAQQAVQNLQKVAMMNGR---KAEG 303

  Fly   349 LKLEAQIRRDKLKKQKKKMANV----GLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPAL 409
            .:|..::....::.:   .|:|    .:.||.|||.:|..|..:...||:|...|.||:......
Mouse   304 ERLTTEVVSSYIQDE---FASVRTSNSILDLFRTPAIRRVTCCLMGVWFSNSVAYYGLAMDLQKF 365

  Fly   410 GTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYL 474
            |.:.|:...|..::::|:.|.....|...|||..:|..:||.|:..:..:.:|:|......|...
Mouse   366 GLSIYLVQALFGIIDIPAMLVATTTMIYVGRRATVSSFLILAGLMVIANMFMPEDLQTLRTVQAA 430

  Fly   475 VSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFL 539
            :.|..|::||:.:|.|.||||||::|.:|:|.:|....||.:..|.||.||:.:..||.|..|..
Mouse   431 LGKGCLASSFICVYLFTGELYPTEIRQMGMGFASVNARLGGLVAPLITTLGEISPVLPPVSFGAT 495

  Fly   540 SMLGGM-TGLRLPETLHHRLPQTIEEGEEFGKNWQFKDCCRCAQKPEILS 588
            |:|.|| ....|.||.:..|.:||...|...|..:.|.  ...||.|.:|
Mouse   496 SVLAGMAVACFLTETRNVPLVETIAAMERRVKQGRSKR--DTEQKSEEIS 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 161/535 (30%)
MFS 182..551 CDD:119392 117/377 (31%)
Slc22a20NP_941052.1 2A0119 11..518 CDD:273328 161/535 (30%)
MFS 138..507 CDD:119392 117/378 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 526..556 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I9078
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.020

Return to query results.
Submit another query.