DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and Slc22a17

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_803156.2 Gene:Slc22a17 / 305886 RGDID:631405 Length:520 Species:Rattus norvegicus


Alignment Length:534 Identity:138/534 - (25%)
Similarity:213/534 - (39%) Gaps:105/534 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 CYTYGV------NWTQ-------------LLESGEEDDLTTMEPNASW----PLIKCPQGWEYN- 156
            |: ||.      .|.|             |..|.....:|:.:|:.|.    ....|.:.|:|| 
  Rat    15 CH-YGALPPNASGWEQPPNSSGVSVAGAALAASAASRVVTSTDPSCSGFAPPDFNHCLKDWDYNG 78

  Fly   157 TSVVWSSIVIDFDLVCD-------QDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLA 214
            ..|:.::.:..:|||||       :.|...:|.|:       |....|...||.|||   .:.|.
  Rat    79 LPVLTTNAIGQWDLVCDLGWQVILEQILFILGFAS-------GYLFLGYPADRFGRR---GIVLL 133

  Fly   215 TL-----------LAGS---LMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSF 265
            ||           .|||   :||           .|.::|..:..|....:::.|||.....|..
  Rat   134 TLGLVGPCGVGGAAAGSSTGIMT-----------LRFLLGFLLAGVDLGVYLMRLELCDPTQRLR 187

  Fly   266 VTVMTCTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLY----MFVMPESPRWLLMRGRLE 326
            |.:........|..|..|:..:.:||..|..:.:.|...:..|    :|:  ||.|||:::.::|
  Rat   188 VALAGELVGVGGHFLFLGLALVSKDWRFLQRMITAPCILFLFYGWPGLFL--ESARWLIVKRQIE 250

  Fly   327 EALKILERMAKVNGREFPEAVHLKLEAQIRRDKLKK--QKKKMANVGLADLCRTPNMRLKTILIT 389
            ||..:|..:|:   |..|....|..|||....:|:.  .....:....|.|....|: .|.:||.
  Rat   251 EAQSVLRILAE---RNRPHGQMLGEEAQEALQELENTCPLPTTSTFSFASLLNYRNI-WKNLLIL 311

  Fly   390 LSWFANETVYLGLSYYGPALGTNQYVSFFL-SAVVELPSYLCCWYF---MDTWGRRWPLSLSMIL 450
              .|.|...:.....|.|..|......|:| |.:....:.|.|.:.   :|.:|||..|.|||.|
  Rat   312 --GFTNFIAHAIRHCYQPVGGGGSPSDFYLCSLLASGTAALACVFLGVTVDRFGRRGILLLSMTL 374

  Fly   451 GGVACVITV----MLPDDAVDETLVLYLVSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIG 511
            .|:|.::.:    .|.|.|:....||.|.|.   .||.::....|.|:.||.|||.|:|....:|
  Rat   375 TGIASLVLLGLWDYLNDAAITTFSVLGLFSS---QASAILSTLLAAEVIPTTVRGRGLGLIMALG 436

  Fly   512 GLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEEGEEFGKNWQFKD 576
            .||.:..|...........|..|::...::|..::.:.||||....||:.:.:||          
  Rat   437 ALGGLSCPAQRLHMGHGAFLQHVVLAACALLCILSIMLLPETKRKLLPEVLRDGE---------- 491

  Fly   577 CCRCAQKPEILSQP 590
            .||   :|.:|.||
  Rat   492 LCR---RPSLLRQP 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 130/503 (26%)
MFS 182..551 CDD:119392 102/396 (26%)
Slc22a17NP_803156.2 MFS 106..476 CDD:119392 103/401 (26%)
2A0114 111..475 CDD:273326 102/395 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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