DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and Slc22a20

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001381833.1 Gene:Slc22a20 / 293686 RGDID:1311460 Length:556 Species:Rattus norvegicus


Alignment Length:563 Identity:166/563 - (29%)
Similarity:257/563 - (45%) Gaps:86/563 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 DLLPTIGEFGKYQKLLVFGICLPACIPCGFCA---FNQLFMADTPDDY----------------- 82
            |||..:|..|::|  ||:...|  .:|||..|   |.|.|.|..|..:                 
  Rat     5 DLLDALGGVGRFQ--LVYTALL--LLPCGLLACHTFLQNFTAAAPPHHCQHPANYTEATTNDSGA 65

  Fly    83 WCRIPELLDLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLI 147
            |.|    ..:||.|.   .:|:          .|..|           .|.....:|||.|...:
  Rat    66 WLR----ATIPLNQH---GVPE----------PCQRY-----------TEPQWALLEPNTSSHGV 102

  Fly   148 K---CPQGWEYNTSVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSY 209
            .   |..||.|:.|:..|:||:::||||:......:..:...:|..||..|||.|.||.||:...
  Rat   103 ATEGCKDGWVYDRSIFPSTIVMEWDLVCEARTLRDLAQSIYMSGVLVGAALFGSLADRLGRKAPL 167

  Fly   210 FVCLATLLAGSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGE----NYRSFVTVMT 270
            ......|.....:|:....|..:...|.::|:|...:    .:.||.||.|    ..|:...::.
  Rat   168 VWSYLQLAVSGAVTAYVGSFSAYCIFRFLMGMTFSGI----ILNSLSLVVEWMPTRGRTVAGILL 228

  Fly   271 CTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERM 335
            ...:|.|.::|:||.||.|.|..|.:..|.||..:|||.:.:|||.||||:.|:.::|::.|.::
  Rat   229 GFSFTLGQLILAGVAYLIRPWRWLQFAVSAPFLVFFLYSWWLPESSRWLLLHGKAQQAVQNLRKV 293

  Fly   336 AKVNGREFPEAVHLKLE----------AQIRRDKLKKQKKKMANVGLADLCRTPNMRLKTILITL 390
            |.:|||: .|...|.:|          |.:|...           .:.||.|||.:|..|..:.:
  Rat   294 AMMNGRK-AEGERLTIEVVSSYIQNEFASVRTSN-----------SILDLFRTPGIRKVTCCLMM 346

  Fly   391 SWFANETVYLGLSYYGPALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVAC 455
            .||:|...|.||:......|.:.|:...|..::::|:.|.....|...|||..:|..::|.|:..
  Rat   347 VWFSNSVAYYGLAMDLQKFGLSIYLVQALFGIIDIPAMLVATTTMIYVGRRATVSSFLVLAGLMV 411

  Fly   456 VITVMLPDDAVDETLVLYLVSKALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPF 520
            :..:.:|:|......|...:.|..|::||:.:|.|.||||||::|.:|:|.:|....||.:..|.
  Rat   412 IANMFVPEDLQTLRTVQAALGKGCLASSFICVYLFTGELYPTEIRQMGMGFASVNARLGGLAAPL 476

  Fly   521 ITYLGKDNLKLPLVIMGFLSMLGGMTGL-RLPETLHHRLPQTI 562
            ||.||:.:..||.|..|..|:|.||..: .|.||.:..|.:||
  Rat   477 ITTLGEISPVLPPVSFGATSVLAGMAVICFLTETRNVPLVETI 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 161/554 (29%)
MFS 182..551 CDD:119392 117/383 (31%)
Slc22a20NP_001381833.1 MFS_SLC22A6_OAT1_like 103..508 CDD:341004 129/420 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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