DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and SPBC8E4.01c

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_596846.2 Gene:SPBC8E4.01c / 2541258 PomBaseID:SPBC8E4.01c Length:572 Species:Schizosaccharomyces pombe


Alignment Length:522 Identity:114/522 - (21%)
Similarity:183/522 - (35%) Gaps:167/522 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 YPT--IGL--AALNTGGPVGVYLFGLLNDRGGRRLSY-----FVCLATLLA----GSLMTSLSKD 228
            ||:  .||  |:.|.|...|..|||.:.|..||:..|     .|.:||:|.    .|:.:.|||.
pombe    90 YPSGIRGLVNASANIGNIFGQLLFGFMGDFFGRKFVYGKEMVIVIIATVLVIAMPKSIHSPLSKM 154

  Fly   229 FWT--WAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFV----TVMTCTFYTSGIMLLSG--VT 285
            .|.  |   |.::|:.|...|.:...|:.|      ||.:    |:::..|...|...|:|  ||
pombe   155 MWVFCW---RWLLGVGIGGDYPMSAAITSE------RSKIKRRGTLISLIFAFQGFGTLAGAIVT 210

  Fly   286 Y------------------LERDWVRLSY-ITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKI 331
            .                  ||..| ||.: :..:|.....:...:|.||              |.
pombe   211 IILLGCFEHPLNREGHYHKLEGVW-RLQFGLALVPAIGVLIPRLIMKES--------------KS 260

  Fly   332 LERMAKVNGRE--FPEAV-------HLKLEAQIRRDKLKKQKKKMANVGLADLCRTPNMRLKTIL 387
            .|....:|..|  .|:|.       ::|..:.....::.:...:.||...|......|:..:...
pombe   261 YENSKALNSAEGKDPKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQFAA 325

  Fly   388 IT-------------------------LSWFANETVYLG--------LSYYGPALGTNQYVSFFL 419
            :|                         :.||..:..:.|        |...|.:.|||:|.:...
pombe   326 VTTPENSSGFITYFRQWRHFKHLLGTSVCWFLLDIAFYGVNLNQSVILKNIGFSTGTNEYRTLMK 390

  Fly   420 SAVVEL--------PSYLCCWYFMDTWGRRW-PLSLSMILGGVACVITVMLPDDAVDETLVLYLV 475
            :|:..|        |.|....:.::..||:| .|...:|.|.:..::.....:.:.......:::
pombe   391 NAIGNLIIAVAGYVPGYWFNVFLVEILGRKWIQLQGFVITGLMFAILAGRWNEISTGGRFACFVI 455

  Fly   476 SKALLSASF-----LIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVI 535
              |.|.::|     ..|||  .|::|.:|||...|.|:.:|..|.|              |..::
pombe   456 --AQLFSNFGPNSTTFIYP--AEVFPARVRGTAHGVSAALGKCGAI--------------LASLL 502

  Fly   536 MGFLS---------------MLGG-MTGLRLPETLHHRLPQTIEEGEEF------------GKNW 572
            ..||:               |.|| :..|.|||| ..|....|:..|.|            .|:|
pombe   503 FNFLTGVIGYGNVMWIFCGCMWGGILFTLLLPET-KGRDADEIDRLELFYGKDGKVQCDSKWKSW 566

  Fly   573 QF 574
            .|
pombe   567 YF 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 108/495 (22%)
MFS 182..551 CDD:119392 100/478 (21%)
SPBC8E4.01cNP_596846.2 2A0109 27..547 CDD:129965 109/499 (22%)
MFS 48..534 CDD:119392 103/485 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
TreeFam 00.000 Not matched by this tool.
11.000

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