DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and oat-1

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_501442.2 Gene:oat-1 / 177649 WormBaseID:WBGene00003837 Length:526 Species:Caenorhabditis elegans


Alignment Length:605 Identity:144/605 - (23%)
Similarity:244/605 - (40%) Gaps:141/605 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KPESQPSVDEAF--DLDD--LLPTIGEFGKYQKL--LV--FGICLPACIPCGFCAFNQL------ 73
            |..:....||.|  |::|  :|..:....|::.|  ||  ...|:...|.....||..|      
 Worm     4 KSSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRWYCMLVLIMAEITAFTALASVMVM 68

  Fly    74 -FMADTPDDYWCRIPELLDLPLEQRKSLSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTT 137
             |....|....|                        |..|.:.|:.|   ::....||       
 Worm    69 VFAGANPTVVGC------------------------DNTVVNGCHEY---YSLKNRSG------- 99

  Fly   138 MEPNASWPLIKCPQGWEYNTSVVWSSIVIDFDLVCD--QDIYPTIGLAALNTGGPVGVYLFGLLN 200
                       |....||.    :.|:.::|:.:||  :.:..||.:...  |..||..:||.::
 Worm   100 -----------CTPVLEYQ----FESVQVEFNYICDDAKKVKNTITIQTF--GVLVGAAIFGQVS 147

  Fly   201 DRGGRRLSYFV-CLATLLAGSLMTSLSKD---FWTWAGSRVIVGLTIPAVYQIPFIISLELVGEN 261
            |..|||.:..: |:...:. :|::|.|..   |..|   |.:.|:....:..:..:..:|.:..:
 Worm   148 DNFGRRKALIISCIGNAIF-NLISSYSPSLFYFMLW---RTVSGIFAGGLTVVQMVYMVENIPRH 208

  Fly   262 YRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLE 326
            :|.:  :.....::..:::...:.||.::|..||.:.|......||.:.::.||||||:.:|:||
 Worm   209 HRMW--IQNSITWSPNLIIFPYIAYLAQNWRTLSVVISATSVLSFLALMLLEESPRWLVQKGKLE 271

  Fly   327 EALKILERMAKVNG-------REFPEAVHLKLEAQIRRDKLKKQKK----------KMAN----- 369
            ||.::|.::.|.:|       ::..|.  ||:||:.:....||.||          ||..     
 Worm   272 EARRLLIKIRKTDGLYTSDFEKDLDEV--LKIEAEKQVISSKKSKKYTFIHLFCTWKMIAQTMTF 334

  Fly   370 -VGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPA-LGTNQYVSFFLSAVVELPSYLCCW 432
             ||:  :|        |..|..:...|.....|..|:..| :|..::|   ::.||.:..|...|
 Worm   335 IVGI--IC--------TNFIVYALLYNMEKLSGSLYWNSAIIGAARWV---VNIVVSIADYQLPW 386

  Fly   433 YFMDTWGRRWPLSLSMI--LGGVACVITVMLPDD-----AVDETLVLYLVSKALLSASFLIIYPF 490
            :     |||....:|||  |..:|.|...:...:     |:..|:.|     |:.|..|:..|..
 Worm   387 F-----GRRLINHISMIFTLASLAIVAGYVYIGNGGYVVAIGTTVAL-----AMCSQLFIAKYLM 441

  Fly   491 AGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLP-LVIMGFLSMLGGMTGLRLPET- 553
            ..|||||.||.:.:.|.|.:..:|.:..|.:.||......:| .|::||..:...:..:.:||| 
 Worm   442 VNELYPTAVRNLAVSAVSTMSRVGGMFSPQLFYLSDIAEWIPYAVLVGFQLVDLVLFCITIPETK 506

  Fly   554 ---LHHRLPQTIEEGEEFGK 570
               |.:.||.  |....|||
 Worm   507 GVHLENHLPP--EHKRIFGK 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 133/569 (23%)
MFS 182..551 CDD:119392 100/404 (25%)
oat-1NP_501442.2 2A0119 36..513 CDD:273328 130/558 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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