DRSC/TRiP Functional Genomics Resources

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Protein Alignment CarT and Sv2a

DIOPT Version :10

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_476558.2 Gene:Sv2a / 117559 RGDID:619715 Length:742 Species:Rattus norvegicus


Alignment Length:535 Identity:97/535 - (18%)
Similarity:165/535 - (30%) Gaps:181/535 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 GGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFI 252
            |..||.:|:|.|.||.|||....:.|:.....:..:|..:.:.|:...|::.|:.|.....|.|.
  Rat   214 GMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFS 278

  Fly   253 ISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRLSYI-------TSLPFYAYFLYMF 310
            ...|.:.:..|.......|.|:     ::.||......|..:.:.       ::..|:::.:::.
  Rat   279 YFSEFLAQEKRGEHLSWLCMFW-----MIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVL 338

  Fly   311 V--------------MPESPRWLLMRGRLEEALKILERMAKVNGRE--FPEAV----HLKLEAQI 355
            |              .|||||:.|..|:.:||..:|:::...|.|.  .||.|    |:|...| 
  Rat   339 VCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKTIHQ- 402

  Fly   356 RRDKLKK---------QKKKMANVGLAD-------LCRTPNMRLKTILITLSWFANETVYLGLSY 404
             .|:|.:         |:..:..:.|..       .|.:|..|..|:::...||.....|.||:.
  Rat   403 -EDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFLSCFSPEYRRITLMMMGVWFTMSFSYYGLTV 466

  Fly   405 YGPAL------------------------------------------------------------ 409
            :.|.:                                                            
  Rat   467 WFPDMIRHLQAVDYAARTKVFPGERVEHVTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLF 531

  Fly   410 ---------------------------------------------------------GTNQ---- 413
                                                                     ||.:    
  Rat   532 EECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKFVNSRLVNSTFLHNKEGCPLDVTGTGEGAYM 596

  Fly   414 -YVSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSK 477
             |...||..:..||..:.....||..||...|:.|.:|..|:|.....  .::....:.|..:..
  Rat   597 VYFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVLSCVSCFFLSF--GNSESAMIALLCLFG 659

  Fly   478 ALLSASFLIIYPFAGELYPTQVRGIGIGASSYIGGL----GLIGIPFITYLGKDNLKLPLVIMGF 538
            .:..||:..:.....||||:..|....|   ::..|    .::||...|.........|::....
  Rat   660 GVSIASWNALDVLTVELYPSDKRTTAFG---FLNALCKLAAVLGISIFTSFVGITKAAPILFASA 721

  Fly   539 LSMLGGMTGLRLPET 553
            ...||....|:||||
  Rat   722 ALALGSSLALKLPET 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 MFS_SLC22 152..551 CDD:340875 93/531 (18%)
xylE <306..>342 CDD:182225 12/49 (24%)
Sv2aNP_476558.2 synapt_SV2 1..742 CDD:130366 97/535 (18%)
Interaction with SYT1 1..57
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..145
Blue background indicates that the domain is not in the aligned region.

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