DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and LOC100490946

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_031756488.1 Gene:LOC100490946 / 100490946 -ID:- Length:517 Species:Xenopus tropicalis


Alignment Length:548 Identity:157/548 - (28%)
Similarity:259/548 - (47%) Gaps:58/548 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLDDLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQLFMADTPDDYWCRIPELLDLPLEQRKS 99
            |.|.|      |..:|.::|..:..|.|. .|...|..:|.|..| .|.||....:|.|      
 Frog     9 DKDSL------FSPFQAIMVTLLSAPLCF-VGTHNFMPVFAAAVP-PYNCRSNMTMDQP------ 59

  Fly   100 LSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVVWSSI 164
             ..|::         .|       ||.:.|         ..|::.|   |.:||||:.|:..|:|
 Frog    60 -RYPED---------PC-------TQYVSS---------LSNSTKP---CEEGWEYDHSIFTSTI 95

  Fly   165 VIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAG-SLMTSLSKD 228
            :.::|||||:.....:..:....|..||..::|.|.||.||| :..:|....:|| .:..:||.:
 Frog    96 ISEWDLVCDRQTLKEVAQSVYMAGVLVGAAVYGALADRFGRR-AMILCSLLQIAGMGIGVALSPN 159

  Fly   229 FWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVR 293
            ...:...|.:.|:.|..:......:::|.....||..|:::.....|.|.::|.|:.|..|.|..
 Frog   160 IIVYCLFRFLTGMGICGLIINDLGLAMEWTPRRYRPIVSMIQGYGLTCGAIILVGLAYAIRGWRW 224

  Fly   294 LSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVHLKLEAQIRRD 358
            |....|||::.:||.|..:|||.|||.::....:||..|.|:||:|||:  |...:.|| .::.|
 Frog   225 LQLTASLPYFIFFLLMCWVPESARWLSLKKHSNQALANLNRVAKINGRK--EGGPITLE-MLKLD 286

  Fly   359 KLKKQKKKMANVGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLSAVV 423
            .....|.....:...||.|||.||..|::::||||::...:..::......|.:.|::..:.|..
 Frog   287 DQHSTKAMTTKLTPLDLFRTPTMRTITLILSLSWFSSSFGFFAIALDVDRFGLSLYLTQGVFAGS 351

  Fly   424 ELP----SYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKALLSASF 484
            |||    :.:..:|.    |||..:|..:|..|...:.|:.:|.|.:...::|.:::||.|.:..
 Frog   352 ELPIRILATITAFYI----GRRLTISFLLIFAGTLLLCTMAVPKDMLLLQMILTVLAKASLGSCI 412

  Fly   485 LIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGLR 549
            :..|.:..|:|||.:|..|:|.::.:..||.|..|.:.........||:||...:.::.|:..|.
 Frog   413 VCSYLYTAEVYPTVLRQTGLGFTNMMMRLGAIISPLVMITRVYVSFLPMVIFAVMPIISGLPILL 477

  Fly   550 LPETLHHRLPQTIEEGEEFGK--NWQFK 575
            |||||:..|..|:||.|...:  |:|.|
 Frog   478 LPETLNCPLMDTVEEVESRNRELNFQIK 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 147/521 (28%)
MFS 182..551 CDD:119392 106/373 (28%)
LOC100490946XP_031756488.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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