DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and slc22a2

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_002933908.1 Gene:slc22a2 / 100487774 XenbaseID:XB-GENE-965056 Length:544 Species:Xenopus tropicalis


Alignment Length:547 Identity:166/547 - (30%)
Similarity:268/547 - (48%) Gaps:39/547 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 DDLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQL-----FMADTPDDYWC---RIPELLDLP 93
            |:||..||||..:||.:...:|..:.:      |:.:     |:...| ||.|   .|||..: .
 Frog     5 DELLEHIGEFDAFQKQIFILLCFISVV------FSPIYVGIVFLGFVP-DYRCVSAGIPEPSN-E 61

  Fly    94 LEQRKSLSIPKELDNDELVYSKCYTYGVNW--TQLLESGEEDDLTTMEPNASWPLIKCPQGWEYN 156
            .|...:.:.|.. ..|.|..|:||.|.|:|  |.|..:....::|     :..|:..|..||:||
 Frog    62 CEWTLNYTGPNG-STDSLYMSQCYQYDVDWNSTSLNCTNSSLNIT-----SKLPITNCKDGWDYN 120

  Fly   157 TSVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAG-- 219
            |:  .||:|.:|:|||..........:.:|.|..:|..:.|.:.||.||:  .|:..:.|:.|  
 Frog   121 TT--GSSLVTEFNLVCGDSWKLDFFQSCVNIGFFIGGLISGYIADRFGRK--PFLISSILITGIF 181

  Fly   220 SLMTSLSKDFWTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSGV 284
            .::.:.:.::......|.|.|......:...:|:..|.||..:|..|.::....:|.|::|||||
 Frog   182 GILMAFAPNYPLVVTFRFIQGFVSKGCWLSGYILVAEFVGLEHRRTVGIVYQAAFTVGLLLLSGV 246

  Fly   285 TYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVHL 349
            .|:...|..|....::|::.:..|.:.:|||||||:.:.|..||..|:..:||.||:..|:.:. 
 Frog   247 AYVLPHWRWLQMTVTIPYFFFLAYYWCVPESPRWLISQNRKAEAKAIIHTIAKKNGKMVPDFLE- 310

  Fly   350 KLEAQIRRDKLKKQKKKMANVGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQY 414
                .:..|:...:|:..:   ..||.|||.:|..|:::...||....||.|...:..:...|.|
 Frog   311 ----SLTADEEAGEKQVPS---FLDLVRTPQIRKHTLILMYIWFTCAVVYQGSIMHMGSTAENIY 368

  Fly   415 VSFFLSAVVELPSYLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKAL 479
            ..||:||:||.||.:.....:|..|||:|..:..|:.|:.|:||..:|.......:.|..||:..
 Frog   369 FDFFISALVEFPSAILIIVTVDRVGRRYPWLVCCIITGITCLITAFIPHGYSWLIITLSCVSRMG 433

  Fly   480 LSASFLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITY-LGKDNLKLPLVIMGFLSMLG 543
            ::.|:.::.....|||||.:|.:||...|.:..||.:..|||.| |.....:|||::...|:.:.
 Frog   434 ITVSYEMVCLVNAELYPTFIRNLGIMVCSSMCDLGGVITPFIVYRLAAIWQELPLIVFAVLATVS 498

  Fly   544 GMTGLRLPETLHHRLPQTIEEGEEFGK 570
            |:....||||....||:||||.|...|
 Frog   499 GILVYFLPETKGRALPETIEEAENLHK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 156/529 (29%)
MFS 182..551 CDD:119392 108/371 (29%)
slc22a2XP_002933908.1 2A0119 12..516 CDD:273328 156/529 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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