DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CarT and si:dkey-166k12.1

DIOPT Version :9

Sequence 1:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_001341287.1 Gene:si:dkey-166k12.1 / 100001249 ZFINID:ZDB-GENE-120215-78 Length:537 Species:Danio rerio


Alignment Length:556 Identity:182/556 - (32%)
Similarity:273/556 - (49%) Gaps:42/556 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DLDDLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQLFMADTPDDYWCRIPELLDLPLEQRKS 99
            :.|.||.|||.||||||||...||||. |..||.....:|...||             |...|.|
Zfish     2 NFDQLLATIGGFGKYQKLLYVWICLPQ-IFLGFHMMASVFTGATP-------------PHRCRGS 52

  Fly   100 LSIPKELDNDELVYSKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWEYNTSVVWSSI 164
            .|     ..::..::...:: ||.:....:|..|..|............|..||.|:..|..|:.
Zfish    53 TS-----GMEDWTFTSNLSH-VNLSISRLAGFADACTAASGVNRSARTNCETGWVYSHEVFQSTT 111

  Fly   165 VIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRRLSYFVCLATLLAGSLMTSLSKDF 229
            |.::|||||:....::|.:....|..||..:||.:.||.|||.:..|.||......:..:.:.:|
Zfish   112 VTEWDLVCDKRGLSSLGSSIYMLGLLVGAVVFGAMADRYGRRFAMLVSLALQTVFGVAAAFAPNF 176

  Fly   230 WTWAGSRVIVGLTIPAVYQIPFIISLELVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRL 294
            ..:.|.|.|:|:|:..|....|::..|......|....:.|..|:..|.|||:||.:|.|||.:|
Zfish   177 PVYVGLRFIIGMTVSGVIINAFVLGTEWTCTQRRMLAGIFTDYFFGFGYMLLAGVAFLIRDWRKL 241

  Fly   295 SYITSLPFYAYFLYMFVMPESPRWLLMRGRLEEALKILERMAKVNGREFPEAVHLKLEAQIRRDK 359
            ....|.|.:.:..|::|:|.|.||||:..|.|||:.:|.:.|.||||..|..|      |:.|.:
Zfish   242 QLAISAPGFLFIFYIWVLPHSARWLLVNNRKEEAIDLLRKAASVNGRTLPPTV------QVERYE 300

  Fly   360 LKKQKKKMANVGLADLCRTPNMRLKTILITLSWFANETVYLGLSYYGPALGTNQYVSFFLSAVVE 424
            ..:.:.|..   :.||.|||.||.:.:::...||.|..||.|||.....||.:.|::.|:..:||
Zfish   301 SPQGRSKYT---VVDLLRTPQMRKRALILFYIWFVNVLVYYGLSLGVSDLGADLYLTQFMFGLVE 362

  Fly   425 LPS------YLCCWYFMDTWGRRWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKALLSAS 483
            :|:      .|.|       .|:.|||:.:::||.||::|:.||.|:......|.:|.|..::||
Zfish   363 IPARTLVLVLLPC-------SRKIPLSVFLVVGGGACLLTLTLPADSAHVRTALAMVGKFGITAS 420

  Fly   484 FLIIYPFAGELYPTQVRGIGIGASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGL 548
            |.|||.::.||:||.:|..|||.||....:|.:..|.|..||:....:|::|.|...:|.....|
Zfish   421 FAIIYVYSAELFPTVLRQTGIGVSSMFARMGGVLAPLINLLGRHTPVVPMLIFGSTPLLAAALAL 485

  Fly   549 RLPETLHHRLPQTIEEGEEFGKNWQFKDCCRCAQKP 584
            .||||....||.:|.:.|:....:..:...:.:|.|
Zfish   486 ALPETARQPLPDSIHDTEKSTLKYDGQIPVQASQSP 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CarTNP_610052.1 2A0119 44..561 CDD:273328 173/522 (33%)
MFS 182..551 CDD:119392 126/374 (34%)
si:dkey-166k12.1XP_001341287.1 2A0119 11..497 CDD:273328 172/521 (33%)
MFS 123..458 CDD:119392 119/350 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.020

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