DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2617 and Cgrrf1

DIOPT Version :9

Sequence 1:NP_001260636.1 Gene:CG2617 / 35331 FlyBaseID:FBgn0032877 Length:274 Species:Drosophila melanogaster
Sequence 2:XP_038948880.1 Gene:Cgrrf1 / 116679 RGDID:620803 Length:357 Species:Rattus norvegicus


Alignment Length:60 Identity:23/60 - (38%)
Similarity:29/60 - (48%) Gaps:14/60 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 ENAGSA---------SPERCVVCMAQSRNVVVMPCRHLCLCKECSLQLVLLLEDRCPVCR 263
            |.||.|         |.:.||||.....|.|::||||.|||..|     :....:||:||
  Rat   280 EKAGLAGAEVDPVEESSKDCVVCQNGGVNWVLLPCRHACLCDSC-----VCYFKQCPMCR 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2617NP_001260636.1 zf-C3HC4_3 223..269 CDD:290631 18/41 (44%)
Cgrrf1XP_038948880.1 mRING-HC-C3HC5_CGRF1 298..334 CDD:319701 16/40 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4265
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.