DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phr6-4 and CRY2

DIOPT Version :9

Sequence 1:NP_001260632.1 Gene:phr6-4 / 35322 FlyBaseID:FBgn0016054 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_171935.1 Gene:CRY2 / 839529 AraportID:AT1G04400 Length:612 Species:Arabidopsis thaliana


Alignment Length:604 Identity:167/604 - (27%)
Similarity:251/604 - (41%) Gaps:117/604 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVG-ANRWRFL 64
            |...:.|:| |||:.||:.|||||     ||.|..|..|  |:||..|........| |:|| ::
plant     1 MKMDKKTIV-WFRRDLRIEDNPAL-----AAAAHEGSVF--PVFIWCPEEEGQFYPGRASRW-WM 56

  Fly    65 QQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLT---FETDIEPYSVTRDAAVQKLA 126
            :|:|..|...|:.|.|.|.::  |.......|....||...|   |....:|.|:.||..|::..
plant    57 KQSLAHLSQSLKALGSDLTLI--KTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKL 119

  Fly   127 KAEGVRVETHCSHTIYNP-ELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKD 190
            ...|:.|:::....:|.| |:...|  ||...::..:......:.:..|: :|...:.||.....
plant   120 VERGISVQSYNGDLLYEPWEIYCEK--GKPFTSFNSYWKKCLDMSIESVM-LPPPWRLMPITAAA 181

  Fly   191 EVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNT------ 249
            |      |.:.|..        ||||.      |.|| .:...:|....|...:...:.      
plant   182 E------AIWACSI--------EELGL------ENEA-EKPSNALLTRAWSPGWSNADKLLNEFI 225

  Fly   250 -------APNS---LEPSTTVLSPYLKFGCLSARLFNQ--KLKEIIKRQPKHSQPPVS---LIGQ 299
                   |.||   :..||::|||||.||.:|.|...|  ::|:||..:.|:|:...|   .:..
plant   226 EKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG 290

  Fly   300 LMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIH 364
            :..||:...:....|.........:....||....|..:||..||||||.:||.||:|...||:|
plant   291 IGLREYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMH 355

  Fly   365 HLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSAS-AFFHQYFRVYSPVAF 428
            :..|..|:.|..: .|.:.|:.|.:.|...|||.|...:...|.::|.| ...|:..|:.:|...
plant   356 NRIRVIVSSFAVK-FLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQ 419

  Fly   429 GKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDY----------------- 476
            |.|.||:|.|||:::|||::.|...|:.||.|.|...:|.|..|||:|                 
plant   420 GAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKA 484

  Fly   477 --------------PHRIV--KHEVVHKENIKRMG---------------AAYKVNREVRTGKEE 510
                          |..||  ..|.:....||..|               ..|..::.|:..:||
plant   485 ISRTREAQIMIGAAPDEIVADSFEALGANTIKEPGLCPSVSSNDQQVPSAVRYNGSKRVKPEEEE 549

  Fly   511 E------SSFEEKSETSTS 523
            |      ..|:|:...||:
plant   550 ERDMKKSRGFDERELFSTA 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phr6-4NP_001260632.1 PhrB 5..499 CDD:223492 157/568 (28%)
FAD_binding_7 297..496 CDD:377037 69/247 (28%)
CRY2NP_171935.1 DNA_photolyase 7..171 CDD:279247 53/177 (30%)
crypt_chrom_pln 8..486 CDD:131813 149/513 (29%)
FAD_binding_7 213..487 CDD:281440 83/274 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100453
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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