DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phr6-4 and CRY3

DIOPT Version :9

Sequence 1:NP_001260632.1 Gene:phr6-4 / 35322 FlyBaseID:FBgn0016054 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_568461.3 Gene:CRY3 / 832554 AraportID:AT5G24850 Length:569 Species:Arabidopsis thaliana


Alignment Length:481 Identity:130/481 - (27%)
Similarity:218/481 - (45%) Gaps:51/481 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGI------LDWMQVGANRWRF 63
            :...:.|||..||:.||.||...:::::.      :.|::.|||.:      .::.:.||.|..|
plant    83 KGVTILWFRNDLRVLDNDALYKAWSSSDT------ILPVYCLDPRLFHTTHFFNFPKTGALRGGF 141

  Fly    64 LQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW--RVEMLTFETDIEPYSVTRDAAVQKLA 126
            |.:.|.||...|.|....|.:..|||.|:.|.:.|.:  |......||..|...|.|  .|.:..
plant   142 LMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVER--LVNQGL 204

  Fly   127 KAEG--VRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVE-------QLKVPKVLGVPEKLK 182
            |..|  .::|.....|:|:.: .:..::...|..|.:|...||       ..::|..||      
plant   205 KRVGNSTKLELIWGSTMYHKD-DLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLG------ 262

  Fly   183 NMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPN-KFPGGETEALRRMEESL--KDEIWVARF 244
              |||..|:..       |.||:::|...|:|:... :|.|||:..:.|:.|..  ||.:.|.: 
plant   263 --PTPSVDDWG-------DVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYK- 317

  Fly   245 EKPNTAPNSLEPS-TTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYT 308
               .|....|.|. :|..||:|.|||:|.|...::::...|.:..::. ...::.:|:||:::..
plant   318 ---ETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-TYWVLFELIWRDYFRF 378

  Fly   309 VAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 373
            ::....|....||....:|..|.:.....|:|...:||||.|||.|::|...|::.:..|..|..
plant   379 LSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCS 443

  Fly   374 FLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHY 438
            ||.| |:.:.|..|...||..|||.|...|.|||.:.:......:..|.:|.....:..||:|.|
plant   444 FLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEY 507

  Fly   439 IRKYVPELSKYPAGCIYEPWKASLVD 464
            :..::.:|.:.|....:.|.:...:|
plant   508 VAFWLQQLRRLPKEKRHWPGRLMYMD 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phr6-4NP_001260632.1 PhrB 5..499 CDD:223492 130/481 (27%)
FAD_binding_7 297..496 CDD:377037 48/168 (29%)
CRY3NP_568461.3 crypto_DASH 84..515 CDD:274288 126/460 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X403
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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