DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phr6-4 and cry2

DIOPT Version :9

Sequence 1:NP_001260632.1 Gene:phr6-4 / 35322 FlyBaseID:FBgn0016054 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_031756344.1 Gene:cry2 / 100422810 XenbaseID:XB-GENE-984563 Length:570 Species:Xenopus tropicalis


Alignment Length:542 Identity:268/542 - (49%)
Similarity:349/542 - (64%) Gaps:17/542 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDN 73
            |||||||||||||||||.....|.:      ||.::||||........|.||||||.|:|||||.
 Frog    10 VHWFRKGLRLHDNPALSAALRDATS------VRCVYILDPWFAASSSGGVNRWRFLLQSLEDLDT 68

  Fly    74 QLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCS 138
            .|||||||||||||:||:||||:||.|.|..||||.|.||:...|||.:.||||..||.|....|
 Frog    69 SLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEVIVENS 133

  Fly   139 HTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCP 203
            ||:|:.:.:|..|....|:||::|..|:.::::|: ...|...:......:.|:::.....|..|
 Frog   134 HTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPR-RPAPSVTRQQMEACRAEIKRNHDETYGVP 197

  Fly   204 TMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFG 268
            ::.:|....|..||:.:||||||||.|::..|:.:.|||.:|:|....|||..|.|.|||||:||
 Frog   198 SLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYERPRMNANSLLASPTGLSPYLRFG 262

  Fly   269 CLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEH 333
            |||.|||..:|||:.|:..|:|.||:||.|||:||||:||.|...|.||:|.||..|:||||.::
 Frog   263 CLSCRLFYYRLKELYKKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKN 327

  Fly   334 PDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQ 398
            |..|..|..|:||:|:|||||.||||||||||||||||||||||||||.|||.|.:||::||||.
 Frog   328 PKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDA 392

  Fly   399 DWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLV 463
            |:::|||:|||||.||||.|:|..|.||.||::|||.|.|:|:|:|.|..:|:..|||||.|...
 Frog   393 DFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPES 457

  Fly   464 DQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK---------VNREVRTGKEE-ESSFEEKS 518
            .|:...|::|.|||..||.|....:.||:||...|:         :...|.:..|: .....:.|
 Frog   458 VQKEAKCIIGIDYPKPIVNHAEASRMNIERMKQTYQQLSRYRGLCILASVPSCMEDLGGPMADSS 522

  Fly   519 ETSTSGKRKVRRATGSAPKRKR 540
            :..:....|.......:|||||
 Frog   523 QNISEAAPKQSLCNVESPKRKR 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phr6-4NP_001260632.1 PhrB 5..499 CDD:223492 258/489 (53%)
FAD_binding_7 297..496 CDD:377037 118/198 (60%)
cry2XP_031756344.1 PhrB 9..495 CDD:223492 259/491 (53%)
FAD_binding_7 292..490 CDD:397482 118/197 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 172 1.000 Domainoid score I3681
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 586 1.000 Inparanoid score I985
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 1 1.000 - - otm47742
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X403
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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