DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phr6-4 and cry4

DIOPT Version :9

Sequence 1:NP_001260632.1 Gene:phr6-4 / 35322 FlyBaseID:FBgn0016054 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_012812443.1 Gene:cry4 / 100170456 XenbaseID:XB-GENE-5945160 Length:558 Species:Xenopus tropicalis


Alignment Length:526 Identity:242/526 - (46%)
Similarity:330/526 - (62%) Gaps:49/526 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQV-GANRWRFLQQTLEDLD 72
            :|.|||||||||||.|   .||...:...|   |::|||...:....| |:.||.|..|::|||.
 Frog     6 IHIFRKGLRLHDNPTL---VTALETSDVVY---PVYILDRNFMTSSSVIGSKRWNFFLQSIEDLH 64

  Fly    73 NQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHC 137
            ..|:||||.|||::|....|.....:.|.:..:||:.:||||....|..::.:.:..|..|.:..
 Frog    65 CNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQELGFEVVSMV 129

  Fly   138 SHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDC 202
            :||:|:.:.::|.|.||.|:||:.|      |:|..::|.|:|       |..::..:|... .|
 Frog   130 AHTLYDIKTILALNCGKPPLTYKNF------LRVLSMIGNPDK-------PARQITSEDFIR-KC 180

  Fly   203 PTMKQL-------VKRPEELG-----PNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLE 255
            .|..:|       :.:||:||     |..:.|||:|||.|:|:.|:.:.|||.|:||.|.||||.
 Frog   181 ITPTKLAAEEYYRIPKPEDLGISKDCPTNWVGGESEALSRLEQHLEKQGWVANFKKPQTIPNSLL 245

  Fly   256 PSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRML 320
            ||||.||||...||||.|:|..:|..|..:...||.|||||.|||:||||:||||::.|||..|:
 Frog   246 PSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSKNHSLPPVSLQGQLLWREFFYTVASSTPNFTHMV 310

  Fly   321 GNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWE 385
            ||..|:||.|.::.:.|:.|...:||:|:|||||.||..||||||||||||||||||||||||||
 Frog   311 GNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWE 375

  Fly   386 EGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYP 450
            ||.:|||:.|||.|:.:|||||||||||||||.|.|::.||.||:::||:|:|||||:|.|..:|
 Frog   376 EGMKVFEEFLLDADYCINAGNWMWLSASAFFHHYTRIFCPVRFGRRSDPEGNYIRKYLPVLKNFP 440

  Fly   451 AGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKVNREVRTGKEEESSFE 515
            |..|||||.|....|:..||::|.|||..:|.|:...:.|::.|       |:||         |
 Frog   441 AKYIYEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTASEHNLQLM-------RQVR---------E 489

  Fly   516 EKSETS 521
            |:.:|:
 Frog   490 EQQKTA 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phr6-4NP_001260632.1 PhrB 5..499 CDD:223492 236/502 (47%)
FAD_binding_7 297..496 CDD:377037 118/198 (60%)
cry4XP_012812443.1 PhrB 5..488 CDD:223492 237/508 (47%)
DNA_photolyase 5..170 CDD:279247 66/182 (36%)
FAD_binding_7 213..486 CDD:281440 160/279 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X403
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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