DRSC/TRiP Functional Genomics Resources

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Protein Alignment phr6-4 and cry1a

DIOPT Version :9

Sequence 1:NP_001260632.1 Gene:phr6-4 / 35322 FlyBaseID:FBgn0016054 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001070765.2 Gene:cry1a / 100003956 ZFINID:ZDB-GENE-010426-2 Length:619 Species:Danio rerio


Alignment Length:494 Identity:258/494 - (52%)
Similarity:339/494 - (68%) Gaps:13/494 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDN 73
            ||||||||||||||:|      .::..|.:.||.::||||.......||.:|||||.|.|||||.
Zfish     6 VHWFRKGLRLHDNPSL------RDSILGAHSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDA 64

  Fly    74 QLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCS 138
            .||||||||||:||:|.:||||:||.|.:..|::|.|.||:...||||::|||...||.|....|
Zfish    65 SLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVIVRIS 129

  Fly   139 HTIYNPELVIAKNLGKAPITYQKFLGIV---EQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAY 200
            ||:|:.:.:|..|.|::|:||::|..::   |.::.|......|.:....||..|:.::|    :
Zfish   130 HTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCTTPLSDDHDEK----F 190

  Fly   201 DCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYL 265
            ..|::::|....|.|....:||||||||.|:|..|:.:.|||.||:|....|||..|.|.|||||
Zfish   191 GVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYL 255

  Fly   266 KFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPW 330
            :|||||.|||..||.::.::..|:|.||:||.|||:||||:||.|...|.||:|.||..|:||||
Zfish   256 RFGCLSCRLFYFKLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW 320

  Fly   331 QEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395
            .::|:.|..|..||||:|:|||||.||||||||||||||||||||||||||||||||.:|||:||
Zfish   321 DKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 385

  Fly   396 LDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKA 460
            ||.||::|||:|||||.|:||.|:|..|.||:||::|||.|.|||:|:|.|..:||..||:||.|
Zfish   386 LDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450

  Fly   461 SLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499
            ....|:|..|::|..||..:|.|....:.||:||...|:
Zfish   451 PESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQIYQ 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phr6-4NP_001260632.1 PhrB 5..499 CDD:223492 257/492 (52%)
FAD_binding_7 297..496 CDD:377037 122/198 (62%)
cry1aNP_001070765.2 PhrB 5..491 CDD:223492 258/494 (52%)
DNA_photolyase 5..167 CDD:279247 82/166 (49%)
FAD_binding_7 213..486 CDD:281440 163/272 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I3581
eggNOG 1 0.900 - - E1_COG0415
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 592 1.000 Inparanoid score I941
OMA 1 1.010 - - QHG63905
OrthoDB 1 1.010 - - D378952at2759
OrthoFinder 1 1.000 - - FOG0000663
OrthoInspector 1 1.000 - - otm25330
orthoMCL 1 0.900 - - OOG6_100453
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2229
SonicParanoid 1 1.000 - - X403
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.810

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