DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc23 and lapB

DIOPT Version :10

Sequence 1:NP_610036.2 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_415796.1 Gene:lapB / 944858 ECOCYCID:EG12691 Length:389 Species:Escherichia coli


Alignment Length:382 Identity:71/382 - (18%)
Similarity:130/382 - (34%) Gaps:157/382 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 IYLIAQMALVY----------HNKRD--------------------VDKAIELYQALLESDPYRL 284
            ::|:..:|..|          .||:|                    .|||::|:..:|:.|...:
E. coli     5 LFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTV 69

  Fly   285 DNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNP 349
            :...|..| ||....:.:.|...|:.:.                     ...:::|.||.|.:..
E. coli    70 EAHLTLGN-LFRSRGEVDRAIRIHQTLM---------------------ESASLTYEQRLLAIQQ 112

  Fly   350 KYLAAWTLMGHEFMELKNTNAAIQSYRKAVEV-----NKRDYRAWYGLGQAYEIIKMHYYSLYYF 409
                    :|.::|       |...|.:|.::     ::.|:|    :|...::::::       
E. coli   113 --------LGRDYM-------AAGLYDRAEDMFNQLTDETDFR----IGALQQLLQIY------- 151

  Fly   410 KIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVGDIEGIAMYKLANLHEKLGDHETAV 474
                                        .|...:.|||||.:       :|.    |||..:..|
E. coli   152 ----------------------------QATSEWQKAIDVAE-------RLV----KLGKDKQRV 177

  Fly   475 HCYIMYCE------------------DERAATDKQSLYQGFITLANYYEKKGEYERAAYYAYKCL 521
            .....|||                  .:.||.||.|. :..|.:...:..||||.:|.....:.:
E. coli   178 EIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSA-RVSIMMGRVFMAKGEYAKAVESLQRVI 241

  Fly   522 DSEDRKMEAKALL----------KTIDWKRNAEG-QKKVKTSTAVANADTSSEDEME 567
             |:||::.::.|.          ||.:|   ||. |:.|:.:|. |:|:....|.:|
E. coli   242 -SQDRELVSETLEMLQTCYQQLGKTAEW---AEFLQRAVEENTG-ADAELMLADIIE 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc23NP_610036.2 ANAPC8 13..119 CDD:427675
LapB 255..521 CDD:442196 54/318 (17%)
TPR repeat 255..278 CDD:276809 9/52 (17%)
TPR repeat 318..346 CDD:276809 3/27 (11%)
TPR repeat 351..381 CDD:276809 5/29 (17%)
TPR repeat 386..414 CDD:276809 2/27 (7%)
TPR repeat 420..448 CDD:276809 3/27 (11%)
TPR repeat 454..477 CDD:276809 5/22 (23%)
TPR repeat 494..522 CDD:276809 6/27 (22%)
lapBNP_415796.1 PRK11788 10..389 CDD:236983 70/377 (19%)
TPR repeat 68..98 CDD:276809 6/51 (12%)
TPR repeat 103..132 CDD:276809 9/43 (21%)
TPR repeat 141..169 CDD:276809 8/73 (11%)
TPR repeat 180..208 CDD:276809 3/27 (11%)
TPR repeat 213..243 CDD:276809 7/31 (23%)
TPR repeat 248..277 CDD:276809 7/31 (23%)
Blue background indicates that the domain is not in the aligned region.

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