DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc23 and HBT

DIOPT Version :10

Sequence 1:NP_610036.2 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_849994.1 Gene:HBT / 816519 AraportID:AT2G20000 Length:744 Species:Arabidopsis thaliana


Alignment Length:309 Identity:80/309 - (25%)
Similarity:159/309 - (51%) Gaps:13/309 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 LYLNDDGLKIYEDLQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQALLESDPYRLDNVDTYSN 292
            :|...:.|..|..|....::.. ::::|:...|....|..:|.:.::....:.||.|:.:|.||.
plant   429 MYRCQEALDTYMKLPHKHYNTG-WVLSQVGKAYFELIDYLEAEKAFRLARLASPYCLEGMDIYST 492

  Fly   293 LLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNPKYLAAWTL 357
            :|:..:...:::.||.:.:|.::..|::.|.:||.||::.||:.|:..|.||::|||::..|.||
plant   493 VLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFLRAVQLNPRFAYAHTL 557

  Fly   358 MGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYEIIKMHYYSLYYFKIAHQLRPYDSRM 422
            .|||:..|::....::||:.|:.|:.|.|.||||||..|...:...:|.::|::|..:.|..|.:
plant   558 CGHEYTTLEDFENGMKSYQNALRVDTRHYNAWYGLGMIYLRQEKLEFSEHHFRMAFLINPSSSVI 622

  Fly   423 LVALGETYEKLDKCENAVKCYWKAIDVGDIEGIAMYKLANL---HEKLGDHETAVHCYIMYCEDE 484
            :..||.:...|.:.|.|::...:||.......:.||:.||:   .|:|.:....:.      |.:
plant   623 MSYLGTSLHALKRSEEALEIMEQAIVADRKNPLPMYQKANILVCLERLDEALEVLE------ELK 681

  Fly   485 RAATDKQSLYQGFITLANYYEKKGEYERAAYYAYKCLDSEDRKMEAKAL 533
            ..|..:.|:|   ..:...|:::..:::|..:....||.:....:..|:
plant   682 EYAPSESSVY---ALMGRIYKRRNMHDKAMLHFGLALDMKPPATDVAAI 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc23NP_610036.2 ANAPC8 13..119 CDD:427675
LapB 255..521 CDD:442196 73/268 (27%)
TPR repeat 255..278 CDD:276809 4/22 (18%)
TPR repeat 318..346 CDD:276809 12/27 (44%)
TPR repeat 351..381 CDD:276809 10/29 (34%)
TPR repeat 386..414 CDD:276809 11/27 (41%)
TPR repeat 420..448 CDD:276809 7/27 (26%)
TPR repeat 454..477 CDD:276809 6/25 (24%)
TPR repeat 494..522 CDD:276809 3/27 (11%)
HBTNP_849994.1 ANAPC3 15..88 CDD:463743
BepA 61..>161 CDD:443813
BepA 451..582 CDD:443813 39/130 (30%)
TPR 518..>684 CDD:440225 54/171 (32%)
TPR repeat 518..546 CDD:276809 12/27 (44%)
TPR repeat 551..581 CDD:276809 10/29 (34%)
TPR repeat 586..612 CDD:276809 10/25 (40%)
TPR repeat 620..647 CDD:276809 6/26 (23%)
TPR repeat 654..682 CDD:276809 7/33 (21%)
TPR repeat 688..716 CDD:276809 4/30 (13%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.