DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc23 and AlaRS-m

DIOPT Version :10

Sequence 1:NP_610036.2 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_523932.2 Gene:AlaRS-m / 38595 FlyBaseID:FBgn0028962 Length:1012 Species:Drosophila melanogaster


Alignment Length:176 Identity:35/176 - (19%)
Similarity:78/176 - (44%) Gaps:52/176 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 VVLKALNLNQ---AAEQMLVQAIRLVPMLWSAYLELSPLIMEKKKLLSLQLGGHWMRHFFMAHTY 225
            |:.||||:::   |.:::|.|   |||::.....|..|.:..|::.:                  
  Fly   332 VLRKALNISEHVFAHDKLLTQ---LVPIVVETLGEAYPEMAAKQQAV------------------ 375

  Fly   226 LELYLNDDGLKIYEDLQASGFSKSIYLIAQMALVYHNKRDVD-----------KAIELYQALLES 279
            ::|..::.  ::|::|:.|. ||:   .|::.:.:.|..|:|           :.:::.:....:
  Fly   376 IDLICHEQ--EVYKNLRESS-SKA---FAEVLMEFPNLDDIDLMECPGFVPAYRELQMQRCKFSN 434

  Fly   280 DP------YRLDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPE 319
            :.      |:|  .|||.   ..:|...::|:|.:....:.:||.|
  Fly   435 NTIPGDFLYKL--TDTYG---LTEESFLKLAELENMNCDLERYRAE 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc23NP_610036.2 ANAPC8 13..119 CDD:427675
LapB 255..521 CDD:442196 14/82 (17%)
TPR repeat 255..278 CDD:276809 3/33 (9%)
TPR repeat 318..346 CDD:276809 1/2 (50%)
TPR repeat 351..381 CDD:276809
TPR repeat 386..414 CDD:276809
TPR repeat 420..448 CDD:276809
TPR repeat 454..477 CDD:276809
TPR repeat 494..522 CDD:276809
AlaRS-mNP_523932.2 PLN02900 13..1010 CDD:215487 35/176 (20%)
Blue background indicates that the domain is not in the aligned region.

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