DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cdc23 and Cdc23

DIOPT Version :9

Sequence 1:NP_001260629.1 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_001094129.1 Gene:Cdc23 / 291689 RGDID:1304819 Length:597 Species:Rattus norvegicus


Alignment Length:605 Identity:276/605 - (45%)
Similarity:375/605 - (61%) Gaps:50/605 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RELRRGIIECS----KRGLLHSTKWLAEMHHGLADVHIDNEAPDEDRTFSECQLEGIAPEEYSDY 76
            ||:::.::..:    :||||||:||.||:...|..:.:....|....|..:.|       :...|
  Rat    30 REIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPALPLSELQPPPPLTEEDAQ-------DVDAY 87

  Fly    77 FLAKSYYDVREYDRAAHAVRNCESSVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADL 141
            .|||:|:||:|||||||.:..|.|....||:.||.|::.||::.|.|.|.....|..|:::  :.
  Rat    88 TLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKN--EA 150

  Fly   142 LATLRMEYGKSR----LDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLIME 202
            |..||:|..:..    |||:|:|||||||:.|:|.:.|..:.|:|..::|:.|.|:|||..||.:
  Rat   151 LRELRVELSRKHQARGLDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITD 215

  Fly   203 KKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSIYLIAQMALVYHNKRDVD 267
            |:.|..|.|...||:.||:||.|.||.|.::.|:.|:.|...|||||.|:::|:|:.|||.||:|
  Rat   216 KEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDID 280

  Fly   268 KAIELYQALLESDPYRLDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRC 332
            ||:.::..|.:.||||::|:||:||||:|:.||:|::.|||....|:|||.|||||||||||:|.
  Rat   281 KALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRS 345

  Fly   333 DHQVAISYFQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGLGQAYE 397
            .|:.|..||||||||||:||.||||||||:||:|||:||||:||.|:|||||||||||||||.||
  Rat   346 QHEKAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYE 410

  Fly   398 IIKMHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVGDIEGIAMYKLAN 462
            |:||.:|.|||::.||||||.||||||||||.||||::...|.||||:|..|||:|.:|:.|||.
  Rat   411 ILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAK 475

  Fly   463 LHEKLGDHETAVHCYIMYCED-----ERAATDKQSLYQGFITLANYYEKKGEYERAAYYAYKCLD 522
            |||:|.:.|.|..|||.|.:|     |.....::|  ..|..||.||.|...::.|:..|.||..
  Rat   476 LHEQLTESEQAAQCYIKYIQDIYSCGETVEHLEES--TAFRYLAQYYFKCKLWDEASTCAQKCCA 538

  Fly   523 SEDRKMEAKALLKTIDWKRNAEGQKKVKTSTAVANADTSSEDEMEWELQDVRVRVPITSIATTTT 587
            ..|.:.|.||||:.|...||   |.:..||      ||                 |.|.....:.
  Rat   539 FNDTREEGKALLRQILQLRN---QGETPTS------DT-----------------PGTFFLPASL 577

  Fly   588 STTTVAAESASSSSLISLRP 607
            |.........|..:|.|:.|
  Rat   578 SANNTPTRRVSPLNLSSVTP 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc23NP_001260629.1 ANAPC8 11..119 CDD:281973 39/106 (37%)
TPR 235..507 CDD:223533 164/276 (59%)
TPR repeat 255..278 CDD:276809 11/22 (50%)
TPR repeat 318..346 CDD:276809 19/27 (70%)
TPR repeat 351..381 CDD:276809 22/29 (76%)
TPR repeat 386..414 CDD:276809 19/27 (70%)
TPR repeat 420..448 CDD:276809 19/27 (70%)
TPR repeat 454..477 CDD:276809 10/22 (45%)
TPR repeat 494..522 CDD:276809 10/27 (37%)
Cdc23NP_001094129.1 ANAPC8 45..148 CDD:397937 38/102 (37%)
TPR repeat 172..197 CDD:276809 12/24 (50%)
TPR repeat 202..257 CDD:276809 24/54 (44%)
TPR 216..451 CDD:223533 146/234 (62%)
TPR repeat 263..291 CDD:276809 12/27 (44%)
TPR repeat 331..359 CDD:276809 19/27 (70%)
TPR repeat 367..393 CDD:276809 19/25 (76%)
TPR repeat 398..428 CDD:276809 21/29 (72%)
TPR repeat 433..461 CDD:276809 19/27 (70%)
TPR repeat 467..495 CDD:276809 14/27 (52%)
TPR repeat 501..536 CDD:276809 11/34 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340947
Domainoid 1 1.000 98 1.000 Domainoid score I7014
eggNOG 1 0.900 - - E1_COG0013
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3426
Inparanoid 1 1.050 509 1.000 Inparanoid score I1271
OMA 1 1.010 - - QHG54610
OrthoDB 1 1.010 - - D143997at33208
OrthoFinder 1 1.000 - - FOG0003812
OrthoInspector 1 1.000 - - otm44786
orthoMCL 1 0.900 - - OOG6_102790
Panther 1 1.100 - - LDO PTHR12558
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2656
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.