DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc23 and mat-3

DIOPT Version :9

Sequence 1:NP_001260629.1 Gene:Cdc23 / 35315 FlyBaseID:FBgn0032863 Length:678 Species:Drosophila melanogaster
Sequence 2:NP_497203.1 Gene:mat-3 / 175205 WormBaseID:WBGene00003134 Length:673 Species:Caenorhabditis elegans


Alignment Length:567 Identity:175/567 - (30%)
Similarity:293/567 - (51%) Gaps:54/567 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 KWLA----EMHHGLADVHIDNE-------------APDEDRTFSECQLEGIAPEEYSDYFLAKSY 82
            ||.|    .:::.::::.:||.             ||.||      |:..:.....|.:  |:|.
 Worm   100 KWCAPNTLNLYNQVSELVLDNTRSPMASPASNSLYAPGED------QMPTVKRNHTSRF--AQSL 156

  Fly    83 YDVREYDRAAHAVRNC--ESSVPRFLHF-------YSSYMAREKRRLDSTTDQANLHEPNQMRDL 138
            ...:|:.|||..:...  .:.:..||||       |..::..:...::..|..|....|..    
 Worm   157 IKNKEFRRAAFFLEKTMNGNKLDHFLHFRCLFLAYYQEHLENDAEGIERKTSFAEERSPFS---- 217

  Fly   139 ADLLATLRMEYGKSR--LDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLIM 201
               |...|||..|.|  .|.:..||.|::...|.|...||:.....:...|.:|.|:..||.||.
 Worm   218 ---LLYQRMEDKKLRENEDVWFEYLMGLLEVELGLKDLAEKSFRNVVIREPRIWPAWEALSRLIA 279

  Fly   202 E----KKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSIYLIAQMALVYHN 262
            :    .|.:.|.::...||..:||.......:.:...::..|.|...|.:....:|.::|...:.
 Worm   280 DIEDADKFVTSAEVKSLWMGDWFMTLVLQRFHQHSMAIQKAEQLVTRGMTGLPMIITKIAACSNA 344

  Fly   263 KRDVDKAIELYQALLESDPYRLDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNY 327
            :.|.|:||..::.:.::|||||.::...|:.|:::..:.:::.||.:...::|:|.||||::.||
 Worm   345 RHDHDQAISNFEDVRKADPYRLGDLHLLSDSLYIRNDQKKLSTLAIEVYKVHKFRWETCCIVANY 409

  Fly   328 YSIRCDHQVAISYFQRALKLNPKYLAAWTLMGHEFMELKNTNAAIQSYRKAVEVNKRDYRAWYGL 392
            ::||.|.:.||.:|||||:|||...|.|.|:||||||:||..||..|||:|:|::..|:|.||||
 Worm   410 HAIRRDSEHAIKFFQRALRLNPGLAALWVLIGHEFMEMKNNAAACVSYRRAIEIDPADHRGWYGL 474

  Fly   393 GQAYEIIKMHYYSLYYFKIAHQLRPYDSRMLVALGETYEKLDKCENAVKCYWKAIDVGDIEGIAM 457
            ||.|:|:||..|:|:|::.|.:.:|:|||:|||||:.|.||::.|:|.||:..|...||:||.|:
 Worm   475 GQMYDIMKMPAYALFYYQEAQKCKPHDSRLLVALGDIYSKLNRIEDAEKCFTGAYLFGDVEGNAL 539

  Fly   458 YKLANLHEKLGDHETAVHCY----IMYCEDERAATDKQSLYQGFITLANYYEKKGEYERAAYYAY 518
            :.||.|||:..|...|...:    ::|   |...:.::.:......|||::.|..::::|:.||.
 Worm   540 WSLAKLHERYSDDNKAAQAFEVFLVVY---ELVTSAEEKIIYAIAFLANHFFKIEDFDKASEYAT 601

  Fly   519 KCLDSEDRKMEAKALLKTIDWKRNAEGQKKVKTSTAVANADTSSEDE 565
            |||..|....|...|.:.|...:..|.:..|:.:...:||..:...|
 Worm   602 KCLAFETLCQEGNRLFREIAKIQARESRLPVEEAPGPSNASAAGGQE 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc23NP_001260629.1 ANAPC8 11..119 CDD:281973 22/109 (20%)
TPR 235..507 CDD:223533 107/275 (39%)
TPR repeat 255..278 CDD:276809 5/22 (23%)
TPR repeat 318..346 CDD:276809 15/27 (56%)
TPR repeat 351..381 CDD:276809 17/29 (59%)
TPR repeat 386..414 CDD:276809 15/27 (56%)
TPR repeat 420..448 CDD:276809 15/27 (56%)
TPR repeat 454..477 CDD:276809 9/22 (41%)
TPR repeat 494..522 CDD:276809 9/27 (33%)
mat-3NP_497203.1 TPR repeat 401..428 CDD:276809 15/26 (58%)
TPR_11 434..499 CDD:290150 34/64 (53%)
TPR repeat 434..462 CDD:276809 17/27 (63%)
TPR repeat 467..497 CDD:276809 16/29 (55%)
TPR_11 471..528 CDD:290150 30/56 (54%)
TPR repeat 502..529 CDD:276809 14/26 (54%)
TPR repeat 577..605 CDD:276809 9/27 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159412
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0013
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 272 1.000 Inparanoid score I1814
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54610
OrthoDB 1 1.010 - - D761109at2759
OrthoFinder 1 1.000 - - FOG0003812
OrthoInspector 1 1.000 - - otm14428
orthoMCL 1 0.900 - - OOG6_102790
Panther 1 1.100 - - LDO PTHR12558
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2062
SonicParanoid 1 1.000 - - X2656
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.840

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