DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc2 and scrn3

DIOPT Version :10

Sequence 1:NP_610033.1 Gene:Arpc2 / 35311 FlyBaseID:FBgn0032859 Length:301 Species:Drosophila melanogaster
Sequence 2:XP_009302703.1 Gene:scrn3 / 326058 ZFINID:ZDB-GENE-030131-4783 Length:429 Species:Danio rerio


Alignment Length:217 Identity:39/217 - (17%)
Similarity:64/217 - (29%) Gaps:85/217 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 ELLKREYG--------SLLTDTEEGYN-----------VSVLINLEEIP--------EDCEQIAK 111
            :||::..|        .:|.|.|.|.|           |||:...:.:|        .|.|:   
Zfish   255 KLLQKSNGHISAQTMMDILRDKESGINMEGMFMSTGSMVSVIPKADHLPGVHFFTATPDPER--- 316

  Fly   112 RIGLLKRNCFASVFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVVFSTIFRDEDDVI 176
                       |||:.:                       ::|...|. :....|..|.:||.| 
Zfish   317 -----------SVFKPF-----------------------VFVSDVPP-LKHTSSPCFGEEDPV- 345

  Fly   177 IGKVFMQELREGRRASHTAPQVLFSHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTI 241
                 .::.|...:.:...|  ||...|....:.::....|..|            .||.||...
Zfish   346 -----KKKPRFQSKPNRKHP--LFLKHEVAAAIIDSSGERGQKI------------EKEMRDLEK 391

  Fly   242 NLIHMFRDYLHYHIKCSKAYIH 263
            ..:.....||...::.|...:|
Zfish   392 QKLEEMEKYLTEGVEDSSLLVH 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc2NP_610033.1 P34-Arc 57..284 CDD:461144 39/217 (18%)
scrn3XP_009302703.1 PepD 34..>275 CDD:477862 4/19 (21%)

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