DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc2 and arc2

DIOPT Version :9

Sequence 1:NP_001286102.1 Gene:Arpc2 / 35311 FlyBaseID:FBgn0032859 Length:301 Species:Drosophila melanogaster
Sequence 2:NP_593903.1 Gene:arc2 / 2542287 PomBaseID:SPAC6F6.10c Length:317 Species:Schizosaccharomyces pombe


Alignment Length:322 Identity:144/322 - (44%)
Similarity:206/322 - (63%) Gaps:29/322 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISISLKFYK 65
            |:.|:.||..|.|.|..::.:.    .|.|||..:.|||||.:|||... :|||:.||:|:|.|.
pombe     1 MLSLDYNNIFIYELLTERFSSE----NPSSIDQVVTDFDGVTFHISTPE-EKTKILISLSMKCYP 60

  Fly    66 QLQEHGADELLKREYGSLLTDTEEGYNVSVLINLEEIP---EDCEQIAKRIGLLKRNCFASVFEK 127
            :|..:|..:|||:.||:.:.:.|.|||.|:||:|:::|   |:.||:|..|.:||||..|:.|.:
pombe    61 ELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHR 125

  Fly   128 YFDYQ-----------------EQGEEGQKRAVINYRNDETLYVEAKPDRVTVVFSTIFRDEDDV 175
            .|..|                 ::....|:...|:||::||:.:..:.|||||||||.||:|.|.
pombe   126 AFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDR 190

  Fly   176 IIGKVFMQELREGRR--ASHTAPQVLFSHREPPLELANTDA-RVGDNIGYVTFVLFPRHTNKETR 237
            |.||||:||..:.||  |..||||||||:|:||||:.:... :.||:.|:||||||.||...:.|
pombe   191 IFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDFGFVTFVLFERHFTPQNR 255

  Fly   238 DNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEPKNTEKKTITGRTFKR 299
            ::.|:.|.:||:.||:|||.||||:|.|||.:.:||.||||||:|:.: .|:||.|||:|.|
pombe   256 EDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVE-LERKTATGRSFVR 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc2NP_001286102.1 P34-Arc 57..284 CDD:397935 114/249 (46%)
arc2NP_593903.1 P34-Arc 52..302 CDD:281970 114/249 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 208 1.000 Domainoid score I618
eggNOG 1 0.900 - - E1_COG4690
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4187
Inparanoid 1 1.050 250 1.000 Inparanoid score I787
OMA 1 1.010 - - QHG54321
OrthoFinder 1 1.000 - - FOG0004402
OrthoInspector 1 1.000 - - oto101183
orthoMCL 1 0.900 - - OOG6_102851
Panther 1 1.100 - - LDO PTHR12058
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R88
SonicParanoid 1 1.000 - - X3120
TreeFam 1 0.960 - -
1413.860

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