DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc2 and Scrn2

DIOPT Version :9

Sequence 1:NP_001286102.1 Gene:Arpc2 / 35311 FlyBaseID:FBgn0032859 Length:301 Species:Drosophila melanogaster
Sequence 2:XP_017169969.1 Gene:Scrn2 / 217140 MGIID:1343092 Length:443 Species:Mus musculus


Alignment Length:125 Identity:29/125 - (23%)
Similarity:42/125 - (33%) Gaps:36/125 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 CEQIAKRIGLLKRNCFASVFEKYFDYQEQG---EEGQKRAVIN----YRNDETL----YVEAKPD 159
            ||.:.:..|    |..|.|.......:|.|   :.|..|...:    ...|.|.    ::.|.||
Mouse   268 CEMLQRHQG----NITAEVMMGILRDKESGICMDSGGFRTTASMVSVLPQDPTKPCVHFLTATPD 328

  Fly   160 RVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTAPQVL---FSHREPPLELANTDARV 216
            ....||             |.|:.|:...:     :||||   |..::|...|.....||
Mouse   329 PSRSVF-------------KPFIFEVGVSQ-----SPQVLSPTFGAQDPVRILPRFQTRV 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc2NP_001286102.1 P34-Arc 57..284 CDD:397935 29/125 (23%)
Scrn2XP_017169969.1 Ntn_hydrolase 29..419 CDD:382028 29/125 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4690
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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