DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and arhgef7a

DIOPT Version :10

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_021334338.1 Gene:arhgef7a / 553493 ZFINID:ZDB-GENE-060322-11 Length:864 Species:Danio rerio


Alignment Length:716 Identity:229/716 - (31%)
Similarity:355/716 - (49%) Gaps:133/716 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVVQAEYSFMGSNNDELCFQKGDVITVTQREDGGWWEGTLNDKTGWFPSNYVNECKVQ----LPL 65
            |||:|.::|..:|.|||.|.|||:|:||:.|:||||||.||.||||||||||.|.|..    .|.
Zfish   171 LVVKARFNFQQTNEDELTFSKGDLISVTRTEEGGWWEGILNGKTGWFPSNYVKEVKGSDKQVSPK 235

  Fly    66 TETIRPPEE-------IQEYRSVVLKDLLDSERAHVAELQGLLENFLEPMQQTQILSQDEYAQLM 123
            :..::.|.:       .:.|.::||:::|::|..:..|||.||.::|.|:|.|:.||..:.:.::
Zfish   236 SGNLKSPPKGFDTASISKTYYNLVLQNILETETEYSRELQNLLTSYLRPLQMTERLSPADVSVIL 300

  Fly   124 CNFVEI-------VRTHEDLLIQIEECNDRVGKLFLTSAPLMKKVHQAYCAAHPKAIVILDKYKD 181
            .|..||       |::.|| |.::.|...:||..||...|.|:.::.:||:.||..:.:|..:.:
Zfish   301 GNLEEISTFQQTLVQSLED-LTKLPELQQKVGGFFLNLMPQMRSLNVSYCSNHPSTVNVLTVHSE 364

  Fly   182 ELEKYMERQGAATPGLLVLTTGLSKPFRRLDKYSAMLQELERHMESSHPDRGDTQRSVAVYKDIA 246
            ||.::||.:||:.||:|.||:||||||.|||:|..:|:|||||||..||||.:.|:.:..:|:::
Zfish   365 ELGEFMEARGASVPGILTLTSGLSKPFMRLDRYPTLLKELERHMEEGHPDRTEIQKCMTAFKNLS 429

  Fly   247 ATCSATRRQKELELQVLTGPVRGWQGQELSTLGDIIHMGSVAV---GADHR-DRYFVLFPQTLLF 307
            |.|...|::||||||:|...:|.|:|:::.|||.:::|....|   |.:.: :||.:|||..||.
Zfish   430 AQCQEVRKRKELELQILAETIRLWEGEDIKTLGSVLYMSQAMVQNHGCEEKNERYLLLFPHVLLI 494

  Fly   308 LSVSQRMSAFIYEGKLPLTGIIVNRLEDTDALKNAFEISSPLIDRIVAVCQGPNEANKWVELLNA 372
            ||.|.|||.|||:|||||:|:.|..|||.::.|:|||:|..:.:|:..:|....:.:.|:|.||.
Zfish   495 LSASPRMSGFIYQGKLPLSGMTVTPLEDCESHKDAFELSGSMFERLQVICYNKQDLHDWLEHLNR 559

  Fly   373 NN--------------------PSLPMGIKRQLSNLSNSSLGHLNAAHLSQHLDSRG--YCTR-- 413
            ..                    ||.|:...|   :..:..|....|.|...|..|.|  :.|.  
Zfish   560 QTKHTTMAAPSMKPLTVPCHTLPSHPLTPSR---HGESRGLTVAPAYHTLPHPSSHGTPHSTMMW 621

  Fly   414 -----------FSLCAYYSSPPCHVRP----------------LRVTLP---PSNYPATAPYANL 448
                       :||.....:||  :||                ::..||   |...|:...:|  
Zfish   622 GPLEPPKTQKPWSLSCLRPAPP--LRPSAALCYKEDLSKSPKTMKKLLPKRKPERKPSDEEFA-- 682

  Fly   449 SAHFARLVKGGGLRSAIVKMLLYPQARQSIDLKRIALRKRRCHKASAKLKDLNTN---QDSGQSE 510
                        ||.:.|.:....|..:.|:....:.:.|:...::.:..||..|   ..|....
Zfish   683 ------------LRKSTVALEEDAQILKVIEAYCTSAKTRQTLNSTWQGTDLMHNHVLDQSSADS 735

  Fly   511 LERQDAIELP--TDSESYDDDFEDDF-LHSC----------DSDPFEYVQFYQNKRNDSMCNSTG 562
            |.|:.:|..|  |...|.|.|::..: .||.          |..|...|...:....|.:.::..
Zfish   736 LGRRSSISRPEATSDLSEDSDYDSIWTAHSYRMGSVTRQWKDGSPALIVPGDEKFSVDELKSNGQ 800

  Fly   563 TFVDHGTGARRHCSSINLIKLDSADTDEVLALNELK------KESLVIGSRALRALAR--KSTTR 619
            |.::..          :|:.:..|..|||   .|||      |:||....||.:.|.|  |...:
Zfish   801 TLLEEK----------SLVDVVYALRDEV---QELKQDYKKMKKSLEEEQRARKDLERIVKKMLK 852

  Fly   620 N 620
            |
Zfish   853 N 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 34/51 (67%)
RhoGEF 79..249 CDD:238091 70/176 (40%)
PH_Cool_Pix 281..376 CDD:269932 40/118 (34%)
arhgef7aXP_021334338.1 CH_SF 4..114 CDD:469584
RhoGEF67_u1 116..168 CDD:465201
SH3_alphaPIX 170..226 CDD:212993 36/54 (67%)
RhoGEF 256..433 CDD:238091 70/177 (40%)
PH_Cool_Pix 464..562 CDD:269932 40/97 (41%)
RhoGEF67_u2 621..711 CDD:465200 16/105 (15%)
betaPIX_CC 779..863 CDD:465158 21/88 (24%)
Blue background indicates that the domain is not in the aligned region.

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