DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and Arhgef7

DIOPT Version :9

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_036010059.1 Gene:Arhgef7 / 54126 MGIID:1860493 Length:919 Species:Mus musculus


Alignment Length:554 Identity:213/554 - (38%)
Similarity:317/554 - (57%) Gaps:77/554 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVVQAEYSFMGSNNDELCFQKGDVITVTQREDGGWWEGTLNDKTGWFPSNYVNECKVQ----LPL 65
            |||:|:::|..:|.|||.|.|||||.||:.|:|||||||.|.:|||||||||.|.|..    .|.
Mouse   223 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPSEKPVSPK 287

  Fly    66 TETIR-PPEEI------QEYRSVVLKDLLDSERAHVAELQGLLENFLEPMQQTQILSQDEYAQLM 123
            :.|:: ||:..      :.|.:|||:::|::|..:..|||.:|..:|.|:|.:..||....:.||
Mouse   288 SGTLKSPPKGFDTTAINKSYYNVVLQNILETEHEYSKELQSVLSTYLRPLQTSDKLSSANTSYLM 352

  Fly   124 CNFVEIVRTHEDLLIQIEEC------NDRVGKLFLTSAPLMKKVHQAYCAAHPKAIVILDKYKDE 182
            .|..||....:.|:..:|||      ..|||..||:..|.|:.::.||||.||.|:.:|.::.::
Mouse   353 GNLEEISSFQQVLVQSLEECTKSPEAQQRVGGCFLSLMPQMRTLYLAYCANHPSAVSVLTEHSED 417

  Fly   183 LEKYMERQGAATPGLLVLTTGLSKPFRRLDKYSAMLQELERHMESSHPDRGDTQRSVAVYKDIAA 247
            |.::||.:||::||:|||||||||||.|||||..:|:|||||||..||||.|.|:|:..:|:::|
Mouse   418 LGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSA 482

  Fly   248 TCSATRRQKELELQVLTGPVRGWQGQELSTLGDIIHMGSVAV---GADHR-DRYFVLFPQTLLFL 308
            .|...|::||||||:||.|:|.|:|.::.|||.:.:|..|.:   |::.: :||.:|||..||.|
Mouse   483 QCQEVRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTIQCAGSEEKNERYLLLFPNLLLML 547

  Fly   309 SVSQRMSAFIYEGKLPLTGIIVNRLEDTDALKNAFEISSPLIDRIVAVCQGPNEANKWVELLNAN 373
            |.|.|||.|||:||||.||:.:.:|||::..:||||||..:|:||:..|....:.::|||.|.. 
Mouse   548 SASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGSMIERILVSCTSQQDLHEWVEHLQK- 611

  Fly   374 NPSLPMGIKRQLSNLSNSSL------GHLNAAH----LSQHLDSRGYCTRFSLCAYYSSP-PCHV 427
                    :.:::::||.::      .|...:|    .|:|.||:....   ..||::.| |.|.
Mouse   612 --------QTKVTSVSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVAL---TPAYHTLPHPSHH 665

  Fly   428 RPLRVTLP--PSNYPATAPYANLSAHFARLVKGGGLRSAIVKMLLYPQARQSIDLKRIALRKRRC 490
            .....|:.  |...|.|....:||.          ||.|       |..|.|..|         |
Mouse   666 GTPHTTISWGPLEPPKTPKPWSLSC----------LRPA-------PPLRPSAAL---------C 704

  Fly   491 HKASAKLKDLNTNQDSGQSELERQDAIELPTDSE 524
            :|     :||:.:..:.:..|.::.....|:|.|
Mouse   705 YK-----EDLSKSPKTMKKLLPKRKPERKPSDEE 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 34/51 (67%)
RhoGEF 79..249 CDD:238091 78/175 (45%)
PH_Cool_Pix 281..376 CDD:269932 42/98 (43%)
Arhgef7XP_036010059.1 CH_SF 3..172 CDD:412120
RhoGEF67_u1 174..220 CDD:406911
SH3_betaPIX 224..277 CDD:212994 34/52 (65%)
RhoGEF 308..485 CDD:238091 78/176 (44%)
PH_Cool_Pix 516..614 CDD:269932 42/106 (40%)
RhoGEF67_u2 670..768 CDD:374671 21/95 (22%)
betaPIX_CC 830..916 CDD:406829
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 158 1.000 Domainoid score I4117
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D251777at33208
OrthoFinder 1 1.000 - - FOG0002550
OrthoInspector 1 1.000 - - otm42328
orthoMCL 1 0.900 - - OOG6_103985
Panther 1 1.100 - - O PTHR46026
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3079
SonicParanoid 1 1.000 - - X1675
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.950

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