DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and arhgef7b

DIOPT Version :10

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_017210203.1 Gene:arhgef7b / 494081 ZFINID:ZDB-GENE-041212-49 Length:856 Species:Danio rerio


Alignment Length:559 Identity:207/559 - (37%)
Similarity:307/559 - (54%) Gaps:90/559 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVVQAEYSFMGSNNDELCFQKGDVITVTQREDGGWWEGTLNDKTGWFPSNYVNECKVQ----LPL 65
            ::|:|.::|..:|.|||.|.|||:|.||::|:||||||.||.||||||||||.|.|..    .|.
Zfish   165 VLVKARFNFQQTNEDELSFSKGDIIQVTRQEEGGWWEGALNGKTGWFPSNYVKEIKGSDKPVSPK 229

  Fly    66 TETIR-PPEEIQE------YRSVVLKDLLDSERAHVAELQGLLENFLEPMQQTQILSQDEYAQLM 123
            |.|:: ||:.|:.      |.:||::::|.:|..:..|||.||..:|..:|.|..||..:.:.:|
Zfish   230 TGTLKSPPKAIESANFCKTYYNVVVQNILQTETEYCKELQNLLSVYLRALQPTDRLSVSDISHIM 294

  Fly   124 CNFVEIVRTHEDLL------IQIEECNDRVGKLFLTSAPLMKKVHQAYCAAHPKAIVILDKYKDE 182
            .|..||....:.|:      :::.:...|:|..||:....|:.::..||:.||.|:.:|.::.:|
Zfish   295 GNLEEISSFQQTLVHSLEENVKVSDSQQRIGGFFLSLLTQMRSLYVTYCSNHPSAVNVLTQHSEE 359

  Fly   183 LEKYMERQGAATPGLLVLTTGLSKPFRRLDKYSAMLQELERHMESSHPDRGDTQRSVAVYKDIAA 247
            |.::||.:||.|||:|.|||||||||.||:||..:|:|:|||||..|||..|.|:|:.::|:::|
Zfish   360 LGEFMESKGANTPGILTLTTGLSKPFLRLEKYPTLLKEMERHMEPLHPDYPDIQKSMTLFKNLSA 424

  Fly   248 TCSATRRQKELELQVLTGPVRGWQGQELSTLGDIIHMGSVAV---GADHR-DRYFVLFPQTLLFL 308
            .|...|::||||||:|...:|||:|:.:.|||.::.|..|.:   ||:.: :||.:|||..||.|
Zfish   425 QCQEVRKRKELELQILMESIRGWEGEGIKTLGTVLFMSQVIIQNHGAEEKNERYLLLFPHILLML 489

  Fly   309 SVSQRMSAFIYEGKLPLTGIIVNRLEDTDALKNAFEISSPLIDRIVAVCQGPNEANKWVELLNAN 373
            |.|.|||.|||:|||||||:.|::.||:|..|:|||||..:|:||..:|....:...||:.|:  
Zfish   490 SASPRMSGFIYQGKLPLTGMSVSKTEDSDGTKHAFEISGNMIERIQVICNNQQDLQDWVDHLH-- 552

  Fly   374 NPSLPMGIKRQLSNLSNSSLG------HLNAAH---LSQHLDSRGYCTRFSLCAYYSSPPCHVRP 429
                     ||...:|.|||.      |...:|   .|:|.:|||..         .||..|..|
Zfish   553 ---------RQTKRISTSSLKPQSVPCHTLPSHPLTPSRHSESRGVS---------GSPVYHTLP 599

  Fly   430 LRVTL---------PPSNYPATAPYANLSAHFARLVKGGGLRSAIVKMLLYPQARQSIDLKRIAL 485
            ...:|         .|...|.|....:||.          ||.|       |..:.|..|     
Zfish   600 HLSSLGTPHSGMMWGPLEPPKTQKPWSLSC----------LRPA-------PPLKPSAAL----- 642

  Fly   486 RKRRCHKASAKLKDLNTNQDSGQSELERQDAIELPTDSE 524
                |:|     :||:.:..:.:..|.::.....|:|.|
Zfish   643 ----CYK-----EDLSKSPKNMKKLLPKRKPERKPSDEE 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 33/51 (65%)
RhoGEF 79..249 CDD:238091 68/175 (39%)
PH_Cool_Pix 281..376 CDD:269932 44/98 (45%)
arhgef7bXP_017210203.1 CH_betaPIX 3..113 CDD:409115
RhoGEF67_u1 115..162 CDD:465201
SH3_PIX 166..218 CDD:212810 33/51 (65%)
RhoGEF 250..427 CDD:238091 68/176 (39%)
PH_Cool_Pix 458..557 CDD:269932 46/109 (42%)
RhoGEF67_u2 613..703 CDD:465200 19/91 (21%)
betaPIX_CC 771..855 CDD:465158
Blue background indicates that the domain is not in the aligned region.

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