DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and Plekhg1

DIOPT Version :10

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_006512502.1 Gene:Plekhg1 / 213783 MGIID:2676551 Length:1487 Species:Mus musculus


Alignment Length:232 Identity:40/232 - (17%)
Similarity:73/232 - (31%) Gaps:90/232 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SLIEKEHGTNPKISRYWIQRYDLFSKYDQGIEMDEE---------------GWYSVTPEEIAIKQ 74
            |:.:|....:|..:..|.:...:.|...:||:..:|               .|.    |.|.::|
Mouse   646 SIGKKRLEKSPSFASEWDEIEKIMSSIGEGIDFSQEQQKISGSRTLEQSVGEWL----ESIGLQQ 706

  Fly    75 AERCRGKVVIDCFSGV---GGNT--------------------IQFAKVCSSVIAIDIDPMKIAL 116
            .|   .|::::.|..|   |.|.                    :|.|:....|.|:..|.:..|.
Mouse   707 YE---SKLLLNGFDDVRFLGSNVMEDQDLREIGISDPQHRRKLLQAARSLPKVKALGYDGVSPAS 768

  Fly   117 AMNNAKVYGVANRI-DFVTGDF-----------MQLAPSLKGDVL--------------FLSPPW 155
            ..:.....|:.:.| .|::..:           ::|...||..:|              :..||.
Mouse   769 VPSWLDSLGLQDYIHSFLSSGYSSIDTVKNLWELELVNVLKVHLLGHRKRIIASLADRPYEEPPQ 833

  Fly   156 GGPTYSKVESYKL-------------------DMLLP 173
            ..|.:|::....|                   |:|||
Mouse   834 KPPRFSQLRCQDLISQTSSPLSQNDSCTGRSADLLLP 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 7/32 (22%)
RhoGEF 79..249 CDD:238091 27/163 (17%)
PH_Cool_Pix 281..376 CDD:269932
Plekhg1XP_006512502.1 RhoGEF 213..387 CDD:459876
PH_PLEKHG1_G2_G3 369..514 CDD:270063
Blue background indicates that the domain is not in the aligned region.

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